Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VQY67_RS11815 Genome accession   NZ_CP142033
Coordinates   2610745..2611152 (+) Length   135 a.a.
NCBI ID   WP_122785481.1    Uniprot ID   A0A5C5Q4Z5
Organism   Pseudomonas saxonica strain NCCB:25029     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2605745..2616152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQY67_RS11785 (VQY67_11785) - 2605872..2606876 (-) 1005 WP_122785487.1 aspartate carbamoyltransferase catalytic subunit -
  VQY67_RS11790 (VQY67_11790) pyrR 2606889..2607407 (-) 519 WP_122785486.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  VQY67_RS11795 (VQY67_11795) ruvX 2607497..2607931 (-) 435 WP_122785485.1 Holliday junction resolvase RuvX -
  VQY67_RS11800 (VQY67_11800) - 2607931..2608503 (-) 573 WP_122785484.1 YqgE/AlgH family protein -
  VQY67_RS11805 (VQY67_11805) - 2608567..2609466 (-) 900 WP_122785483.1 energy transducer TonB -
  VQY67_RS11810 (VQY67_11810) gshB 2609544..2610497 (-) 954 WP_122785482.1 glutathione synthase -
  VQY67_RS11815 (VQY67_11815) pilG 2610745..2611152 (+) 408 WP_122785481.1 twitching motility response regulator PilG Regulator
  VQY67_RS11820 (VQY67_11820) pilH 2611194..2611565 (+) 372 WP_122785480.1 twitching motility response regulator PilH -
  VQY67_RS11825 (VQY67_11825) - 2611576..2612115 (+) 540 WP_122785479.1 chemotaxis protein CheW -
  VQY67_RS11830 (VQY67_11830) - 2612163..2614217 (+) 2055 WP_411172340.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14980.57 Da        Isoelectric Point: 8.5372

>NTDB_id=921211 VQY67_RS11815 WP_122785481.1 2610745..2611152(+) (pilG) [Pseudomonas saxonica strain NCCB:25029]
MEIHSSILKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIFDHHPHIIFVDIMMPRLDGYQTCALIKNNRAFK
LTPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSRDELLSAIKAHVPGFNIAPGTQ

Nucleotide


Download         Length: 408 bp        

>NTDB_id=921211 VQY67_RS11815 WP_122785481.1 2610745..2611152(+) (pilG) [Pseudomonas saxonica strain NCCB:25029]
ATGGAAATACATTCCAGCATCTTGAAGGTGATGGTGATTGACGACTCGAAAACCATCCGCCGCACGGCTGAAACGCTGCT
GAAGAATGTCGGTTGTGAGGTCATTACGGCCATAGACGGTTTCGATGCGCTGGCCAAAATTTTCGACCATCATCCGCATA
TCATTTTTGTCGACATCATGATGCCGCGTCTGGATGGCTATCAGACCTGCGCGTTGATCAAAAACAACCGGGCGTTCAAG
TTGACGCCGGTCATTATGTTGTCGTCCAAAGACGGACTGTTTGATAAGGCCAAGGGACGAATAGTGGGCTCTGATCAATT
TTTAACCAAGCCTTTCAGTCGGGATGAACTGCTGAGTGCCATCAAGGCCCACGTACCCGGTTTTAACATCGCTCCAGGCA
CGCAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C5Q4Z5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.4

92.593

0.689