Detailed information NTG0092114

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QQK52_RS21120
• Genome accession: NZ_AP027963
• Coordinates: 4332232..4333257 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain VE-T9
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4327232..4338257

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQK52_RS21100 (VET9_40660)	metJ	4328294..4328611 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
QQK52_RS21105 (VET9_40670)	yiiX	4328795..4329403 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
QQK52_RS21110 (VET9_40680)	rpmE	4329463..4329675 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
QQK52_RS21115 (VET9_40690)	priA	4329878..4332076 (+)	2199	WP_001300388.1	primosomal protein N'	Machinery gene
QQK52_RS21120 (VET9_40700)	cytR	4332232..4333257 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
QQK52_RS21125 (VET9_40710)	ftsN	4333349..4334308 (+)	960	WP_000068828.1	cell division protein FtsN	-
QQK52_RS21130 (VET9_40720)	hslV	4334401..4334931 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
QQK52_RS21135 (VET9_40730)	hslU	4334941..4336272 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
QQK52_RS21140 (VET9_40740)	menA	4336339..4337265 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
QQK52_RS21145 (VET9_40750)	rraA	4337358..4337843 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
QQK52_RS21150 (VET9_40760)	zapB	4337928..4338173 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=92114 QQK52_RS21120 WP_000644904.1 4332232..4333257(+) (cytR) [Escherichia coli strain VE-T9]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=92114 QQK52_RS21120 WP_000644904.1 4332232..4333257(+) (cytR) [Escherichia coli strain VE-T9]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628