Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV56_RS14850 Genome accession   NZ_AP025492
Coordinates   3304069..3305073 (+) Length   334 a.a.
NCBI ID   WP_017103629.1    Uniprot ID   A0A0T7DQF5
Organism   Vibrio gigantis strain LMG 22741     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3299069..3310073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS14835 - 3299456..3300745 (-) 1290 WP_086715813.1 malic enzyme-like NAD(P)-binding protein -
  OCV56_RS14840 rpmE 3301079..3301297 (-) 219 WP_086715817.1 50S ribosomal protein L31 -
  OCV56_RS14845 priA 3301627..3303828 (+) 2202 WP_086715819.1 primosomal protein N' -
  OCV56_RS14850 cytR 3304069..3305073 (+) 1005 WP_017103629.1 DNA-binding transcriptional regulator CytR Regulator
  OCV56_RS14855 - 3305196..3305735 (+) 540 WP_086715821.1 SPOR domain-containing protein -
  OCV56_RS14860 hslV 3305959..3306507 (+) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  OCV56_RS14865 hslU 3306566..3307906 (+) 1341 WP_086715823.1 HslU--HslV peptidase ATPase subunit -
  OCV56_RS14870 - 3308062..3308979 (+) 918 WP_086715825.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV56_RS14875 rraA 3309053..3309571 (+) 519 WP_017071322.1 ribonuclease E activity regulator RraA -
  OCV56_RS14880 zapB 3309667..3309909 (-) 243 WP_008219652.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36541.09 Da        Isoelectric Point: 6.4911

>NTDB_id=92114 OCV56_RS14850 WP_017103629.1 3304069..3305073(+) (cytR) [Vibrio gigantis strain LMG 22741]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=92114 OCV56_RS14850 WP_017103629.1 3304069..3305073(+) (cytR) [Vibrio gigantis strain LMG 22741]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACAGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCAACTCGAAAACGAGTCGAAACAGCCGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTATTTCGCCGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGATTACCTTGTTCTACTGGGTGATAGCGGCCAGCAAAAGAAGCGCGAGTCTTCATT
TGTTAACTTAGTTTTCACCAAACAAGCTGACGGCATGCTGCTGCTTGGCACTGACCATCCGTTTGATGTCAGCAAGCCTG
AGCAAAAGAATTTACCGCCGATGGTAATGGCGTGTGAGTTTGCCCCTGAGCTTGAGCTGCCTACGGTACACATCGACAAC
CTGACCTCTGCATTCGAAGCGGTTAACTACCTCGCTCAGTTAGGTCATAAACGTATCGCTCAAATTTCAGGACCAGTATC
AGCAACGCTGTGTAAGTTCCGCCAACAAGGCTACCAACAAGCCCTGCGTCGTGCCGGAGTATCGATGAATCCAGCTTACA
GCACAGTCGGCGACTTCACCTTTGAAGCGGGCGCTCAAGCGGTTCGCCAATTACTGGCACTTCCTGAACAGCCAACCGCT
ATTTTCTGTCACAACGATGCGATGGCCATTGGTGCAATTCAAGAAGCGAAGAAGCTCGGCTTACGCGTTCCTCAAGACCT
GTCGATTGTCGGCTTCGATGACATCCAATTCGCCCAATACTGCGATCCACCGCTAACCACCATATCTCAACCTCGTTACG
AAATTGGACGTCAAGCGATGTTGATGATGCTAGATCTACTTAAAGGCAATGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCTAAATTGGTCGTTCGAGGCAGTACAGCGCCACCTCGAATGTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7DQF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.759

99.401

0.892
  cytR Vibrio parahaemolyticus RIMD 2210633

87.688

99.701

0.874

Multiple sequence alignment