Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   DGAOKPDK_RS14340 Genome accession   NZ_CP142019
Coordinates   3045722..3046048 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain EMB-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3040722..3051048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS14320 (VOI31_RS14315) - 3040822..3041451 (-) 630 WP_324641774.1 FHA domain-containing protein -
  DGAOKPDK_RS14325 (VOI31_RS14320) gspD 3041492..3043768 (-) 2277 WP_324641775.1 type II secretion system secretin GspD -
  DGAOKPDK_RS14330 (VOI31_RS14325) - 3043810..3044646 (-) 837 WP_000870031.1 type II secretion system protein N -
  DGAOKPDK_RS14335 (VOI31_RS14330) gspN 3044646..3045389 (-) 744 WP_005129860.1 type II secretion system protein N -
  DGAOKPDK_RS14340 (VOI31_RS14335) hns 3045722..3046048 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  DGAOKPDK_RS14345 (VOI31_RS14340) - 3046243..3046683 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  DGAOKPDK_RS14350 (VOI31_RS14345) - 3046691..3047884 (-) 1194 WP_000681777.1 hypothetical protein -
  DGAOKPDK_RS14355 (VOI31_RS14350) - 3047894..3048733 (-) 840 WP_001230202.1 hypothetical protein -
  DGAOKPDK_RS14360 (VOI31_RS14355) - 3048742..3049509 (-) 768 WP_324641776.1 uroporphyrinogen-III synthase -
  DGAOKPDK_RS14365 (VOI31_RS14360) hemC 3049514..3050431 (-) 918 WP_032010053.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=921068 DGAOKPDK_RS14340 WP_000801427.1 3045722..3046048(-) (hns) [Acinetobacter baumannii strain EMB-1]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=921068 DGAOKPDK_RS14340 WP_000801427.1 3045722..3046048(-) (hns) [Acinetobacter baumannii strain EMB-1]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1