Detailed information NTG0092104

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCV56_RS13515
• Genome accession: NZ_AP025492
• Coordinates: 3051142..3052122 (-)
• Length: 326 a.a.
• NCBI ID: WP_017059027.1
• Uniprot ID: A0A1E5FN76
• Organism: Vibrio gigantis strain LMG 22741
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3046142..3057122

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV56_RS13505	-	3046931..3048265 (-)	1335	WP_150330777.1	site-specific integrase	-
OCV56_RS13510	mutS	3048440..3051025 (+)	2586	WP_390903665.1	DNA mismatch repair protein MutS	-
OCV56_RS13515	rpoS	3051142..3052122 (-)	981	WP_017059027.1	RNA polymerase sigma factor RpoS	Regulator
OCV56_RS13520	nlpD	3052221..3053135 (-)	915	WP_050620526.1	murein hydrolase activator NlpD	-
OCV56_RS13525	-	3053170..3053796 (-)	627	WP_017059029.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCV56_RS13530	surE	3053797..3054540 (-)	744	WP_086711985.1	5'/3'-nucleotidase SurE	-
OCV56_RS13535	truD	3054622..3055668 (-)	1047	WP_086711986.1	tRNA pseudouridine(13) synthase TruD	-
OCV56_RS13540	ispF	3055691..3056170 (-)	480	WP_086711987.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCV56_RS13545	ispD	3056173..3056874 (-)	702	WP_086711988.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37218.43 Da
• Isoelectric Point: 5.1506

>NTDB_id=92104 OCV56_RS13515 WP_017059027.1 3051142..3052122(-) (rpoS) [Vibrio gigantis strain LMG 22741]
MSISNAVTKEEFDLDQATTEPEALGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=92104 OCV56_RS13515 WP_017059027.1 3051142..3052122(-) (rpoS) [Vibrio gigantis strain LMG 22741]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGACCTTGACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCTTAGATGCGACTCAACTGT
ATCTAGGCGAAATCGGTTTCTCACCACTACTAACCGCAGAAGAAGAGGTGCTTTACGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCCCGCAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTGAAAATTTCTCGTCGTTATAGCAACCGTGGCTT
GGCACTTCTCGATCTAATCGAAGAAGGCAACTTAGGCTTGATTCGCGCTGTAGAGAAATTTGACCCAGAGCGTGGCTTCC
GTTTTTCAACTTACGCAACATGGTGGATTCGTCAAACCATTGAACGTGCGTTGATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACGGCAAGAGAACTATCACAAAAGCTTGACCACGAACCGAC
AGCTGAAGAGATCGCTTCTAAGCTCGATAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTAGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGACCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAACTGAATCCTAAGCAGAAAGAGGTGCT
TGCTCGTCGCTTTGGACTACTGGGTTATGAACCGTCAACATTAGAAGAAGTAGGCCGCGAAATCAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGTCGTCTACGTGAGATTCTAATCAAGCAAGGCTTGAACATGGAAAACCTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

3D structure

• AlphaFold DB: A0A1E5FN76

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.737	100	0.837