Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VOI49_RS09525 Genome accession   NZ_CP142018
Coordinates   1886850..1888211 (-) Length   453 a.a.
NCBI ID   WP_037585033.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1881850..1893211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS09505 - 1883367..1884635 (-) 1269 WP_003052904.1 MFS transporter -
  VOI49_RS09510 - 1884730..1885431 (-) 702 WP_003052905.1 hypothetical protein -
  VOI49_RS09515 - 1885435..1885881 (-) 447 WP_003052907.1 LytTR family DNA-binding domain-containing protein -
  VOI49_RS09520 - 1886167..1886661 (-) 495 WP_003052909.1 beta-class carbonic anhydrase -
  VOI49_RS09525 radA 1886850..1888211 (-) 1362 WP_037585033.1 DNA repair protein RadA Machinery gene
  VOI49_RS09530 - 1888294..1888740 (-) 447 WP_003052913.1 dUTP diphosphatase -
  VOI49_RS09535 - 1888849..1889616 (-) 768 WP_226317184.1 epoxyqueuosine reductase QueH -
  VOI49_RS09540 - 1889734..1891518 (-) 1785 WP_003052917.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49430.69 Da        Isoelectric Point: 5.8179

>NTDB_id=921039 VOI49_RS09525 WP_037585033.1 1886850..1888211(-) (radA) [Streptococcus dysgalactiae strain lu24]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEIKNARVSLTGEKSKPVKLKDVDNINYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRSILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEVGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNDIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=921039 VOI49_RS09525 WP_037585033.1 1886850..1888211(-) (radA) [Streptococcus dysgalactiae strain lu24]
ATAGCAAAGAAAAAAGCAACCTTCATTTGTCAAGAATGTGGATATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGATTAAAAATGCTCGTGTTAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAACTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTCGGTGGTGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGCGATCCAGGTATTGGGAAGTCCACCTTACTCCTGCA
AGTATCCACGCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGAGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTGAATCCAGATTTTTTGATTATTGATTCTATCCAAACCATCATGAGTCCTGATATTACAGGTGTTCAAGGATCTGT
TAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACTAACAACATTGCAACCTTTATTGTGGGACATG
TTACCAAGGAAGGAACCTTGGCTGGTCCCCGTATGTTAGAACACATGGTGGATACCGTTCTCTATTTTGAAGGAGAAAGG
CATCACACCTTTCGCATCCTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGTATTTTTGAAATGCAATC
AGCTGGACTTGTTGAGGTCTTAAATCCAAGTCAGGTCTTTCTTGAAGAGCGATTAGATGGTGCTACAGGATCCGCCATTG
TGGTGACCATGGAAGGCAGTCGTTCAATTTTAGCGGAAGTCCAATCTTTGGTCACCCCAACCGTTTTTGGCAATGCTAGA
CGAACCACTACGGGACTTGATTTCAATCGTGTGAGCCTAATCATGGCAGTTTTAGAAAAACGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCTTACCTCAAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTAGCTGTAGCCGTGGCCA
TCGCATCTAGTTATAAGGAAAAACCAACCAACCCTCAAGAAGCTTTCTTAGGAGAGGTTGGATTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGGATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGATATTGAAGTGGTGGGTGTAACAACAGTCGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.504

99.779

0.863
  radA Streptococcus pneumoniae Rx1

86.283

99.779

0.861
  radA Streptococcus pneumoniae D39

86.283

99.779

0.861
  radA Streptococcus pneumoniae R6

86.283

99.779

0.861
  radA Streptococcus pneumoniae TIGR4

86.283

99.779

0.861
  radA Streptococcus mitis SK321

86.283

99.779

0.861
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

100

0.623