Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   VOI49_RS09270 Genome accession   NZ_CP142018
Coordinates   1835747..1836679 (-) Length   310 a.a.
NCBI ID   WP_226314027.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1830747..1841679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS09245 tsaD 1831236..1832252 (-) 1017 WP_003052775.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  VOI49_RS09250 rimI 1832242..1832667 (-) 426 WP_003052778.1 ribosomal protein S18-alanine N-acetyltransferase -
  VOI49_RS09255 tsaB 1832669..1833367 (-) 699 WP_003052781.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  VOI49_RS09260 - 1833653..1833883 (+) 231 WP_003052784.1 DNA-dependent RNA polymerase subunit epsilon -
  VOI49_RS09265 rnjA 1833885..1835567 (+) 1683 WP_003052786.1 ribonuclease J1 -
  VOI49_RS09270 amiF 1835747..1836679 (-) 933 WP_226314027.1 ABC transporter ATP-binding protein Regulator
  VOI49_RS09275 oppD 1836672..1837724 (-) 1053 WP_003052788.1 ABC transporter ATP-binding protein Regulator
  VOI49_RS09280 - 1837736..1838767 (-) 1032 WP_003052791.1 ABC transporter permease -
  VOI49_RS09285 - 1838777..1839691 (-) 915 WP_003052794.1 ABC transporter permease -
  VOI49_RS09290 - 1839959..1841614 (-) 1656 WP_003052797.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35217.09 Da        Isoelectric Point: 6.8433

>NTDB_id=921037 VOI49_RS09270 WP_226314027.1 1835747..1836679(-) (amiF) [Streptococcus dysgalactiae strain lu24]
MNDNRKKLVELKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQYKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLSAIPEPDPDKERQRVADVYDPNQELDGQERQMHEITPGHFVLATQEEAGQYRREYR

Nucleotide


Download         Length: 933 bp        

>NTDB_id=921037 VOI49_RS09270 WP_226314027.1 1835747..1836679(-) (amiF) [Streptococcus dysgalactiae strain lu24]
ATGAATGATAATCGAAAGAAATTAGTAGAGTTAAAAAATGTCTCCTTAACTTTCAATAAGGGAAAGAAAAACGAAGTCAA
AGCCATTGATAATGTGAGCTTTGATATTTATGAAGGGGAAGTGTTTGGACTGGTTGGGGAATCTGGATCAGGAAAAACAA
CTGTTGGTCGTGCCATTTTAAAGCTTTATGATATTAATGAAGGGGAAATTATTTTTAATGGTGAAACCGTTTCTCATTTG
AAAGGGAAAGACTTGCGGACCTTTCGTAAGGATGCTCAGATGATTTTCCAAGATCCTCAGGCTAGTCTTAACGGCCGTAT
GAAAATCAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGACTAACAGCTTCAAAAGCAGAACGAGAAGAACGCGTGC
AAGAACTCCTTGATTTGGTTGGGTTGAATAAGGACCATTTGACACGTTACCCCCATGAATTTTCTGGTGGTCAACGTCAA
CGGATTGGGATTGCCCGTGCTTTGGCGGTGAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTTGATGTGTC
GATTCAGGCCCAGGTGGTTAACTTGATGCAAAAGCTTCAGTACAAACGTGGATTGACCTATCTTTTTATTGCCCATGACT
TGTCAATGGTCAAATACATTTCTGACCGTATCGGAGTCATGCACTGGGGTAAAATGTTGGAGATTGGGACCTCAGATGAT
GTCTATAATCATCCTATTCATCCTTATACCAAGAGCCTACTCTCAGCTATTCCTGAGCCAGATCCAGACAAAGAACGTCA
GCGGGTGGCTGATGTGTATGATCCAAATCAAGAATTGGACGGCCAAGAACGTCAGATGCATGAGATTACTCCAGGCCATT
TTGTCTTAGCTACCCAAGAAGAAGCAGGTCAATATCGACGGGAGTATCGTTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.426

98.387

0.535
  amiF Streptococcus thermophilus LMG 18311

54.098

98.387

0.532
  amiF Streptococcus salivarius strain HSISS4

53.77

98.387

0.529