Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   VOI49_RS08615 Genome accession   NZ_CP142018
Coordinates   1699301..1700026 (-) Length   241 a.a.
NCBI ID   WP_226313625.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1694301..1705026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS08585 - 1694842..1695369 (+) 528 WP_226313628.1 hypothetical protein -
  VOI49_RS08590 - 1695494..1696561 (+) 1068 WP_226313627.1 site-specific integrase -
  VOI49_RS08600 trmB 1696773..1697408 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  VOI49_RS08605 ccrZ 1697408..1698199 (-) 792 WP_003052472.1 cell cycle regulator CcrZ -
  VOI49_RS08610 - 1698264..1699298 (-) 1035 WP_226313626.1 ABC transporter permease -
  VOI49_RS08615 pptA 1699301..1700026 (-) 726 WP_226313625.1 ABC transporter ATP-binding protein Regulator
  VOI49_RS08620 - 1700098..1700517 (+) 420 WP_003052477.1 HIT family protein -
  VOI49_RS08625 - 1700514..1700834 (+) 321 WP_003052479.1 hypothetical protein -
  VOI49_RS08630 brpA 1700994..1702262 (-) 1269 WP_226313624.1 biofilm formation/cell division transcriptional regulator BrpA -
  VOI49_RS08635 - 1702274..1702795 (-) 522 WP_003052483.1 GNAT family N-acetyltransferase -
  VOI49_RS08640 tsaE 1702788..1703231 (-) 444 WP_226313623.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  VOI49_RS08645 - 1703412..1704872 (-) 1461 WP_115253099.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26413.73 Da        Isoelectric Point: 4.8282

>NTDB_id=921033 VOI49_RS08615 WP_226313625.1 1699301..1700026(-) (pptA) [Streptococcus dysgalactiae strain lu24]
MLNIENLTGGYLNIPVLKEVSFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYQGKISIDGLTLAVDPAAYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAQKRAEPFLKMFRLADKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAEKMCDRFVILHHGQVRAQGTLADLQDAFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=921033 VOI49_RS08615 WP_226313625.1 1699301..1700026(-) (pptA) [Streptococcus dysgalactiae strain lu24]
ATGTTAAACATTGAAAATCTAACGGGGGGTTACCTCAATATTCCCGTTTTAAAAGAGGTCTCATTTTCTGTTGGCAATGG
TGAATTAGTTGGGTTGATAGGCCTAAATGGAGCTGGAAAATCAACAACCATCAATGAAATTATTGGTTTTTTAAAACCTT
ATCAGGGAAAAATCTCGATTGATGGACTAACCTTGGCTGTAGATCCAGCTGCCTATCGTAAGAAAATTGGATTTATCCCA
GAGACACCTAGCCTCTATGAAGAATTAACTTTGGCAGAGCATATTAATACTGTAGCTATGGCCTATGATATTGATGTGGA
ATTGGCACAGAAACGAGCAGAACCGTTTTTAAAGATGTTTCGCTTAGCTGATAAATTAGATTGGTTTCCTGTTCATTTTT
CAAAAGGCATGAAGCAAAAAGTCATGATTATCTGTGCTTTTGTGATTGATCCAAGTCTGTTTATCCTTGACGAGCCATTT
TTAGGATTAGACCCGTTGGCTATCTCAGACTTGATTCAGACTTTGGAGGTTGAAAAAGCCAAAGGCAAATCGATTTTAAT
GAGTACTCATGTGCTTGACTCTGCTGAAAAAATGTGTGATCGTTTTGTCATTCTGCACCATGGTCAAGTACGGGCTCAGG
GCACGCTTGCTGACTTGCAGGATGCCTTTGGTGATGCTTCTGCTAGCCTTAACGATATTTACCTGGCATTGACAAAAGAG
GGCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.732

99.17

0.751
  pptA Streptococcus thermophilus LMD-9

74.895

99.17

0.743