Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   VOI49_RS07350 Genome accession   NZ_CP142018
Coordinates   1467458..1468495 (-) Length   345 a.a.
NCBI ID   WP_115253017.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462458..1473495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS07325 - 1462480..1463421 (-) 942 WP_037584987.1 ABC transporter permease subunit -
  VOI49_RS07330 - 1463423..1464901 (-) 1479 WP_226314002.1 sugar ABC transporter ATP-binding protein -
  VOI49_RS07335 rbsD 1464917..1465315 (-) 399 WP_003051896.1 D-ribose pyranase -
  VOI49_RS07340 rbsK 1465290..1466201 (-) 912 WP_324738895.1 ribokinase -
  VOI49_RS07345 - 1466194..1467177 (-) 984 WP_003051900.1 LacI family DNA-binding transcriptional regulator -
  VOI49_RS07350 sepM 1467458..1468495 (-) 1038 WP_115253017.1 SepM family pheromone-processing serine protease Regulator
  VOI49_RS07355 coaD 1468482..1468973 (-) 492 WP_226314003.1 pantetheine-phosphate adenylyltransferase -
  VOI49_RS07360 rsmD 1468963..1469502 (-) 540 WP_003051907.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VOI49_RS07365 asnA 1469696..1470688 (-) 993 WP_003051908.1 aspartate--ammonia ligase -
  VOI49_RS07370 arcC 1471014..1471964 (-) 951 WP_003051912.1 carbamate kinase -
  VOI49_RS07375 - 1471984..1473315 (-) 1332 WP_003051914.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37548.10 Da        Isoelectric Point: 9.5393

>NTDB_id=921027 VOI49_RS07350 WP_115253017.1 1467458..1468495(-) (sepM) [Streptococcus dysgalactiae strain lu24]
MKTIKKIKWWLISLIALVALLIVLFFPLPYYVEMPGGAYDIRSVVKVNGKEDKDKGSYQFVAVSLSRASLAQLLYAWLTP
FTEISSVEDTTGGYSDADYIRINQFYMETSQNAAVYQALTLADKPVTLDYKGVYVLDVSKDSTFKGALNLADTVTGVNHK
QFTSSTELVDYVSHLKLGDKVTVQFISNSESKSETGRIIKLKNGKNGIGIALTDHTKVNSADKIEFSTQGVGGPSAGLMF
TLDIYDQINKEDLRKGRHIAGTGTIGKNGEVGDIGGAGLKVVAAADAGAEIFFVPNNPVEKAVKKANPKAISNYEEAKRA
AKQLKTKMKIVPVTTVQDALAYLRQ

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=921027 VOI49_RS07350 WP_115253017.1 1467458..1468495(-) (sepM) [Streptococcus dysgalactiae strain lu24]
ATGAAAACAATTAAAAAAATTAAATGGTGGCTGATTAGCCTAATTGCCCTCGTGGCTCTGCTTATCGTCCTCTTTTTCCC
TCTTCCTTACTATGTTGAAATGCCTGGCGGAGCCTATGACATTCGATCTGTGGTCAAGGTTAATGGCAAAGAAGATAAAG
ATAAAGGCTCCTATCAGTTTGTGGCAGTCAGTCTCAGTCGAGCCAGTTTAGCTCAATTGCTCTATGCTTGGCTAACCCCT
TTTACTGAAATCAGTTCAGTTGAGGATACCACAGGCGGTTATAGCGATGCAGACTATATCCGCATTAATCAATTCTACAT
GGAAACCTCACAAAATGCTGCGGTCTATCAGGCATTGACCTTGGCAGACAAACCAGTTACTTTGGACTACAAAGGGGTCT
ATGTGTTAGATGTTAGCAAGGATTCAACCTTTAAAGGTGCTTTAAACTTAGCAGATACGGTAACGGGAGTGAATCACAAA
CAATTTACGAGTTCAACAGAACTTGTGGACTATGTCTCTCATTTAAAACTTGGTGATAAGGTGACTGTGCAGTTTATTAG
TAATAGCGAATCTAAGTCTGAAACAGGTCGTATCATCAAACTAAAAAATGGTAAAAATGGTATCGGCATTGCTTTAACAG
ACCATACTAAAGTCAATTCAGCAGACAAAATCGAGTTTAGTACCCAAGGTGTTGGGGGTCCTAGCGCAGGCTTAATGTTT
ACACTAGATATCTACGACCAAATTAATAAAGAAGACCTTCGTAAAGGAAGACATATCGCCGGGACAGGAACCATTGGTAA
AAATGGTGAAGTTGGAGATATTGGCGGTGCGGGTCTTAAGGTCGTTGCTGCTGCAGATGCTGGTGCTGAGATTTTCTTTG
TGCCGAATAATCCTGTGGAAAAAGCTGTTAAAAAAGCCAATCCAAAAGCTATTAGCAATTATGAAGAGGCCAAGCGAGCA
GCCAAGCAGTTAAAAACAAAAATGAAAATTGTTCCTGTAACAACTGTTCAGGATGCCCTAGCCTACCTTCGTCAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(130-192)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

71.884

100

0.719