Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VOI49_RS06885 Genome accession   NZ_CP142018
Coordinates   1367513..1369315 (-) Length   600 a.a.
NCBI ID   WP_003051527.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362513..1374315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS06860 - 1363183..1363890 (-) 708 WP_115252976.1 O-methyltransferase -
  VOI49_RS06865 - 1363942..1365153 (-) 1212 WP_115246186.1 OFA family MFS transporter -
  VOI49_RS06870 - 1365486..1366106 (-) 621 WP_226313677.1 HAD-IA family hydrolase -
  VOI49_RS06875 - 1366106..1366648 (-) 543 WP_226313676.1 GNAT family N-acetyltransferase -
  VOI49_RS06880 - 1366771..1367325 (-) 555 WP_003051524.1 NADPH-dependent FMN reductase -
  VOI49_RS06885 pepF 1367513..1369315 (-) 1803 WP_003051527.1 oligoendopeptidase F Regulator
  VOI49_RS06890 - 1369326..1370288 (-) 963 WP_115246191.1 competence protein CoiA -
  VOI49_RS06895 - 1370475..1371625 (-) 1151 Protein_1310 IS3 family transposase -
  VOI49_RS06900 - 1371733..1372893 (-) 1161 WP_226313779.1 MFS transporter -
  VOI49_RS06905 - 1372985..1373701 (-) 717 WP_003051538.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69209.03 Da        Isoelectric Point: 4.6827

>NTDB_id=921024 VOI49_RS06885 WP_003051527.1 1367513..1369315(-) (pepF) [Streptococcus dysgalactiae strain lu24]
MTDNRSHLEEKYTWDLSTIFATDKDWEAEVSGLASEIDTAKDFAGHLLDSSANLLTITDTYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMALSQEDYQAFLVETPELKRYHHFFDKLFQTRDHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPVVKNDKGEDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKILQTNVKVQ
NYKARVHKYDSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQDVLGLDELKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYAELNEKYYGLSKDDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQDDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLDAAFKVFEERLTELEALVAKGAHR

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=921024 VOI49_RS06885 WP_003051527.1 1367513..1369315(-) (pepF) [Streptococcus dysgalactiae strain lu24]
ATGACAGATAATCGTAGTCATTTAGAAGAAAAGTACACTTGGGATTTGAGCACTATTTTTGCAACAGATAAGGATTGGGA
AGCTGAAGTGAGTGGCTTAGCTAGTGAAATTGACACGGCTAAGGATTTTGCAGGTCATTTACTAGATTCTAGCGCTAATC
TGTTGACAATTACAGATACTTATTTAGAGTTGGCTCGTCGTGTTGAGAAAGTCTATGTTTATGCGCATATGAAAAATGAT
CAAGACACGACTGTTGCTAAATATCAAGAATATCAGGCTAAGGCTTCTGGCTTGTATGCTAAATTTAGCGAAGTGTTTTC
ATTCTATGACCCAGAAGTTATGGCATTGAGTCAGGAAGATTACCAAGCTTTTCTTGTGGAAACTCCTGAGTTAAAAAGAT
ATCATCATTTCTTTGACAAATTGTTCCAGACACGTGACCATGTGCTTAGTCAGGCTGAAGAGGAATTATTAGCAGGAGCC
CAAGAAATTTTCAACGGCGCTGAAGAAACCTTTAGCATTCTGGATAACGCTGATATTGTCTTTCCAGTAGTTAAAAATGA
TAAGGGGGAAGATGTTGAATTAACCCATGGTAACTTCATCAGTTTAATGGAATCTAAAGATCGTAGCGTTCGCCAAGCTG
CTTACGAGGCAATGTATAGCACTTATGAACAGTTCCAACACACTTATGCTAAAATCTTACAAACAAATGTTAAGGTTCAA
AATTACAAGGCGCGTGTTCATAAATACGATTCAGCACGTCAAGCTGCTATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
CGACACTTTATTAGAAACAGTTAACAAACATTTACCACTTTTACACCGTTACTTGAAACTTCGCCAAGATGTTCTTGGTC
TAGATGAGTTGAAGATGTATGATGTTTACACACCATTATCTGAAACAGACCTAGCCATTGGTTATGATGAGGCTTTGGAA
AAAGCTGAGAAGGTTTTGGCTGTTTTTGGTAAGGATTATGCAGACCGAGTGCATCGTGCCTTTACAGAACGTTGGATTGA
TGTTCATGTCAATAAAGGGAAGCGCTCTGGAGCTTATTCAGGTGGTTCCTACGATACCAATGCCTTTATGCTATTAAACT
GGCAAGATACCTTAGACAATCTATACACTTTAGTTCATGAAACTGGGCACAGTTTGCATTCTACTTTCACTCGTGAAACA
CAGCCTTATGTGTATGGAGATTACAGTATTTTCTTGGCAGAAATTGCATCTACAACTAATGAAAACATCATGACAGAAGC
TCTCTTAAATGAGGTTCAAGATGAGAAAGAACGCTTTGCTATTTTAAACCATTACCTTGACGGTTTCCGTGGCACTGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAACACGCGATCCATCAAGCTGATCAAAAAGGAGAAGTGTTAACGAGCGAATAC
CTCAACCAATTGTATGCTGAGTTGAATGAAAAGTATTATGGGTTGAGTAAAGACGATAATCATTTTATTCAGTATGAATG
GGCACGTATTCCTCACTTCTATTACAATTATTATGTTTATCAGTATGCTACAGGCTTTGCAGCAGCAAGTTATTTAGCCG
ATAAGATTGTTCACGGAACGCAAGACGATATTGATCATTACTTGACCTACCTCAAGTCAGGAAATTCTGACTACCCACTT
GAGGTCATCGCTAAAGCGGGTGTTGATATGGCAAAAGGTGACTATCTTGACGCAGCCTTTAAAGTCTTCGAAGAACGTCT
AACAGAACTTGAAGCCCTTGTTGCAAAGGGAGCTCATCGCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.786

99.833

0.717