Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV56_RS13260 Genome accession   NZ_AP025492
Coordinates   3004106..3004624 (-) Length   172 a.a.
NCBI ID   WP_086711976.1    Uniprot ID   A0A5M9N722
Organism   Vibrio gigantis strain LMG 22741     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2999106..3009624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS13235 rimM 2999192..2999746 (-) 555 WP_048615624.1 ribosome maturation factor RimM -
  OCV56_RS13240 rpsP 2999771..3000019 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  OCV56_RS13245 ffh 3000232..3001626 (-) 1395 WP_010435884.1 signal recognition particle protein -
  OCV56_RS13250 - 3001827..3002621 (+) 795 WP_019825854.1 inner membrane protein YpjD -
  OCV56_RS13255 - 3002749..3004020 (+) 1272 WP_086711975.1 HlyC/CorC family transporter -
  OCV56_RS13260 luxS 3004106..3004624 (-) 519 WP_086711976.1 S-ribosylhomocysteine lyase Regulator
  OCV56_RS13265 - 3004649..3005299 (-) 651 WP_086711977.1 hypothetical protein -
  OCV56_RS13270 gshA 3005310..3006878 (-) 1569 WP_086711978.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18921.64 Da        Isoelectric Point: 4.4820

>NTDB_id=92101 OCV56_RS13260 WP_086711976.1 3004106..3004624(-) (luxS) [Vibrio gigantis strain LMG 22741]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADAWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92101 OCV56_RS13260 WP_086711976.1 3004106..3004624(-) (luxS) [Vibrio gigantis strain LMG 22741]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCTGCAGTTCGTGTAGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACAGTCTTTGACCTGCGTTTTACTGCGCCAAACAAAGATATCCTATCTGAGAAAGGTATCC
ATACTTTAGAGCATCTATATGCTGGCTTTATGCGTGCTCAACTGAACGGTTCTGATGTAGAAATCATCGATATTTCACCT
ATGGGCTGCCGTACTGGTTTCTACATGAGCCTGATTGGTACACCGACAGAGCAACAAGTGGCAGATGCTTGGTTGGCGGC
GATGCAAGATGTACTGAAAGTTGAGAATCAGAATAAGATCCCTGAGTTGAATGAATACCAATGTGGCACTGCTGCAATGC
ACTCTTTGGATGAAGCGAAAGACATCGCCAACGCGATCATCGCAGCTGGTATCTCTGTAAACAAAAATGATGAACTGGCA
CTGCCTGAGTCGATGCTTCAAGAGCTTAAAATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9N722

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment