Detailed information NTG0092095

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OCV56_RS12990
• Genome accession: NZ_AP025492
• Coordinates: 2934032..2937421 (+)
• Length: 1129 a.a.
• NCBI ID: WP_086711921.1
• Uniprot ID: A0A5M9N6D9
• Organism: Vibrio gigantis strain LMG 22741
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2929032..2942421

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV56_RS12970	erpA	2929320..2929661 (-)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-
OCV56_RS12975	hemL	2929958..2931253 (+)	1296	WP_086711915.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OCV56_RS12980	-	2931597..2932682 (+)	1086	WP_086711917.1	AI-2E family transporter	-
OCV56_RS12985	rsmC	2932793..2933815 (+)	1023	WP_086711919.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OCV56_RS12990	chiS	2934032..2937421 (+)	3390	WP_086711921.1	response regulator	Regulator
OCV56_RS12995	-	2938121..2939803 (+)	1683	WP_060982640.1	ABC transporter substrate-binding protein	-
OCV56_RS13000	-	2939973..2940959 (+)	987	WP_017633262.1	ABC transporter permease	-
OCV56_RS13005	-	2940962..2941987 (+)	1026	WP_060982641.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127164.78 Da
• Isoelectric Point: 5.3636

>NTDB_id=92095 OCV56_RS12990 WP_086711921.1 2934032..2937421(+) (chiS) [Vibrio gigantis strain LMG 22741]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSYIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKNDDYGTNLLTGKYKDSNLGVTFQRLAKDVTDRRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGSDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNTLDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVVVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMQLIKSQNDELEDNLKTIKKQNEDLQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDAS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQDELDNYNESGHYSHFQAPDLIDNNQQENSAISENP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGINSNRINNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDAMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=92095 OCV56_RS12990 WP_086711921.1 2934032..2937421(+) (chiS) [Vibrio gigantis strain LMG 22741]
ATGTTTAGATTTTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGCTGGCATTTCTTGTCCTCAGTATTAC
CCCAGTGACACTTATCGCGATATTTTTCCTTCAATCGCACAGTCAGGACCTTCAGGAACAAAGCACCTCACACCTTGTTT
CGGTTCGTGATACTAAGCAGCAGCAAATTGTCGATTACCTACAGGCACAAGAATCTCAAGTTATGGGCTTTGTTCGTTCT
GAACTAGCCAATGCCAGTGGTGGCCGATTCTATGGATTAATCAATGCCTTCCAGCGATTGGGTTTAGACATTGACGAGGC
ACGCAGTAATGCGCAGCAACGCTACATTCAAGGATCGGGCGACCAAATCAAAACATCGATTCTTCCTGAGTCGAGTAGCT
ACATTGGCAGTGAGCGTTATCGCCTATTGCACAAGCGCTACCATAACGCCTACCTAGAGCTGCTTAAACGCTCCGATTTT
GACGATATTCTATTGGTTGATATCAACGGTAACGTTGCTTACTCCGTCTTTAAAAATGACGATTACGGCACTAACTTGCT
GACAGGAAAATACAAAGATTCAAACCTAGGCGTGACCTTCCAACGACTCGCTAAAGATGTCACCGACCGACGTAAATCTA
ATGAAGATTACACGCCTGTTATTGTGTCGGATTTTAAAGACGAGAACGGTAAACAAACCGCATGGCTAGGTGCACCTATC
GTGCAGCAGGGCTATCTACACAGTTACGCGATGTTCAGACTGCCGATCAACGGCATCACCAAACTGATTGCCGATCTAAA
CAAGAGTTCTAACATTCAAACCTTACTGGTAGGTAGTGACCACTTACCTCGTAGCCTTGCGCACTCTCAAGAGTCGATTA
ACTTAAGCCTAGACGTAGTTGATAAAGCACTTGCGGGCGAAACAGCCGTAGGCACATTTGATAACACTCTAGATCAGGCG
ATCATTGCGGCCTATACACCAATTGAACTTAAGTACGCGACTTGGGCTCTCGTTGTCGAGCTTCCTGAAAAAGAGGCATT
TGCCCGTATTCATCAACTAGAAAAGATCTTCGTGATCGTGATGCTGACGGCGATCATTCTGGTTGTTGTCGCATCGCATT
ACCTCTCTAACTTCATCACCTCACCGCTACTCAAGCTCACGTGGGCAGCCGAGAAAGTTTCTGCAGGTGATCTTGATGAG
ACGATGATCAATACAGAACGTAAAGATGAAATCGGTCGTTTGGCGGTCAGCTTTGAACGAATGCAACGCTCCATTCGTGA
AAAGATGCAACTTATCAAAAGCCAAAATGATGAGCTTGAAGACAACCTCAAGACCATTAAAAAGCAAAACGAAGATTTGC
AGTTGGCTAACAAACTCAAAGATGAATTCTTAGCAACCACTTCTCACGAATTGAGAACACCACTGCATGGCATGGTTGGT
ATTGCTGAAGCGTTGATATCAGGAGCGAATGGTCCTATTCCTGCTAATCAGAAGTATCAGTTGGATATCATCATCAATAG
TGGTCAGAGATTGGCGACCTTGGTTGATGATCTGCTTGATTATCACAAGATGCGCTATGGCAGCTTGGACATTAAGAAGT
CAGCCGTTGATTTGTCTGCAGCCACCAGCTTGGTCCTAGAGTTGTCTCATCACCTGCTGGGCAATAAGCCAATCCGTATT
ATTAACCAAGTGCCAAGTGATTTAGGGCTCGTGTCATCGGATCCTCAACGACTTGAGCAGGTGATGTATAACTTGGTTGG
CAATGCCATCAAGTACACCTCGGAAGGTAAAATTGTTATCTCTGCTAGCGTTATCGACGACAACATTCGTGTCCAAGTGG
TTGACACAGGCCAAGGCATACCGGCCGAGTACCTTGAACATATCTTTGAACCATTGATTCAAGCAGGCCAAGATGCCAGT
AACTATCGCCAAGGTGCAGGCCTTGGTTTATCGATCAGTCGCCAATTAATTGAATTAATGGGTGGTTCGCTGTATGTAAG
TAGCCAGCCAATGCTTGGCACTACGTTTAGCTTTACCCTGCCCCTAGCTACTCAAGATGAGTTAGACAATTACAACGAAT
CAGGTCACTACTCACATTTCCAAGCGCCTGACTTGATAGATAACAACCAACAAGAAAACAGCGCTATCAGTGAGAACCCT
GACGGTCCGTTACTGGTTATCGCCGATGATGAGCCCGTTAACCTGCGAGTACTTGACAGCTTCTTGAAGTTAGAAGGTTA
TCGAGTACGTACTGCGTGTGACGGCCCTGAAACCATCGAGTTGATTGAAAAAGAGAAACCGGAACTACTGCTGCTCGATA
TTATGATGCCGGGCATGAGCGGTTACCAAGTGTGTGAGGCACTGCGTAAGCAATATGACCATGCTCAATTACCGATCATA
ATGCTAACGGCACTCAACCAAGCAGAGGATCGTGTGCGCGGCTTCGAAGCTGGTGCCAATGACTACTTATCCAAACCGTT
CAACAAACAAGAACTGGCGGCCCGAATTACAGCGCATCTATCAGCAAGTAAAGCAGAGCAAAGACGCCTTGAAAACGACC
AATTGCAACTTGAGCTCAAACATCGAGCCATGGTTGAAGCTAATCTGTTGGAAACTCAAGGACGATTGCTAGAACAGTTA
GAATCGGCACCAGAGGCCATTATCTGTATTCGTGATGACCAACGAATTCGCTTTGCTAACGAAGCGGCGGCGAAACTCTT
TAGGCGCGGACAAGAGCAACTAAAACGCTCAATGGCCGACGAGATTATTGCACCTAAATACCTCAAGGTAGAACAGGCGC
ATTATTGTGGTGATATTGATATCTATATAGACGACACACGTCAGCGCATACCGAGTGATATTCTTAAGCTGCCTGAAGGC
TCTGGGCTTGACACCATGTACATCTTCAATGTTGGCGGCGGCATAAACTCAAACCGCATCAATAACCTTGAAACTGCAGT
TGAGGCGCTCTCAAGCTATGCATTTGAAGGCGACAAGGATAAGTTACAACAGCTTAAGGAACTTGGTGGTGAATTTACTC
GCCTTGCTGACAAAGCAACCGGTGAAGGTAAAAACAAACAAGAGTTGATGCGTGAGGTGCTGGTAGACGCGATGACTAAT
GCCATCATCTATTGGGAATCGGTTACGGGTGAAACTAAGTTCGCGTTCGCCGAGAAGAGTGGTTTGTGGCGTGTCTATTT
AGACCGCAGTACGCTGCAAACTCGAACGCTAGACAAATACCTACGCGTAGAAACCCTACCAAAAACACCGCGCTGGCGAA
CGGTATTGAGTTCTATCGAATTCATACTTGAGCACTGTAAAGAACAAACACCAGAAAGGACGCATATTGAGATGCTAAGG
GATAAACTGCAGAAACTACTGACCAGTTAA

Domains

Predicted by InterproScan.

• PAS domain (PAS_8) (880-914)

• HAMP domain (HAMP) (375-427)

• Response regulator receiver domain (Response_reg) (726-836)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

3D structure

• AlphaFold DB: A0A5M9N6D9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.528	100	0.765