Detailed information NTG0920948

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VFH86_RS10950
• Genome accession: NZ_CP142014
• Coordinates: 2454897..2455904 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116739.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain LK-18
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2449897..2460904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VFH86_RS10940 (VFH86_10940)	cysM	2451060..2451947 (+)	888	WP_076025805.1	cysteine synthase CysM	-
VFH86_RS10945 (VFH86_10945)	mutS	2452215..2454803 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
VFH86_RS10950 (VFH86_10950)	rpoS	2454897..2455904 (-)	1008	WP_000116739.1	RNA polymerase sigma factor RpoS	Regulator
VFH86_RS10955 (VFH86_10955)	nlpD	2455978..2456913 (-)	936	WP_088128235.1	murein hydrolase activator NlpD	-
VFH86_RS10960 (VFH86_10960)	-	2456913..2457539 (-)	627	WP_248419014.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VFH86_RS10965 (VFH86_10965)	surE	2457532..2458284 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
VFH86_RS10970 (VFH86_10970)	truD	2458286..2459371 (-)	1086	WP_108335950.1	tRNA pseudouridine(13) synthase TruD	-
VFH86_RS10975 (VFH86_10975)	ispF	2459401..2459877 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VFH86_RS10980 (VFH86_10980)	ispD	2459874..2460572 (-)	699	WP_002051127.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VFH86_RS10985 (VFH86_10985)	ftsB	2460569..2460853 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=920948 VFH86_RS10950 WP_000116739.1 2454897..2455904(-) (rpoS) [Vibrio cholerae strain LK-18]
MSVSNTVTKVEEFDFEDEALEVLETDTELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=920948 VFH86_RS10950 WP_000116739.1 2454897..2455904(-) (rpoS) [Vibrio cholerae strain LK-18]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGACGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTAGGTC
GTGAGATCAATCTTACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994