Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VFH86_RS10820 Genome accession   NZ_CP142014
Coordinates   2428564..2429082 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain LK-18     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2423564..2434082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFH86_RS10795 (VFH86_10795) rimM 2423673..2424227 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  VFH86_RS10800 (VFH86_10800) rpsP 2424255..2424503 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  VFH86_RS10805 (VFH86_10805) ffh 2424739..2426124 (-) 1386 WP_114708661.1 signal recognition particle protein -
  VFH86_RS10810 (VFH86_10810) - 2426337..2427131 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  VFH86_RS10815 (VFH86_10815) - 2427214..2428494 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  VFH86_RS10820 (VFH86_10820) luxS 2428564..2429082 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  VFH86_RS10825 (VFH86_10825) gshA 2429131..2430705 (-) 1575 WP_002051177.1 glutamate--cysteine ligase -
  VFH86_RS10830 (VFH86_10830) - 2430817..2433672 (-) 2856 WP_345657488.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=920945 VFH86_RS10820 WP_001130227.1 2428564..2429082(-) (luxS) [Vibrio cholerae strain LK-18]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=920945 VFH86_RS10820 WP_001130227.1 2428564..2429082(-) (luxS) [Vibrio cholerae strain LK-18]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1