Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VFH86_RS07725 Genome accession   NZ_CP142014
Coordinates   1737073..1738497 (+) Length   474 a.a.
NCBI ID   WP_231795691.1    Uniprot ID   -
Organism   Vibrio cholerae strain LK-18     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1732073..1743497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFH86_RS07705 (VFH86_07705) - 1732470..1733255 (-) 786 WP_002051972.1 adenosylcobinamide-GDP ribazoletransferase -
  VFH86_RS07710 (VFH86_07710) cobT 1733255..1734280 (-) 1026 WP_069730511.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  VFH86_RS07715 (VFH86_07715) msrB 1734765..1735211 (-) 447 WP_000935885.1 peptide-methionine (R)-S-oxide reductase MsrB -
  VFH86_RS07720 (VFH86_07720) - 1735556..1736929 (+) 1374 WP_000117954.1 L-cystine transporter -
  VFH86_RS07725 (VFH86_07725) sbcB 1737073..1738497 (+) 1425 WP_231795691.1 exodeoxyribonuclease I Machinery gene
  VFH86_RS07730 (VFH86_07730) - 1738529..1738903 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  VFH86_RS07735 (VFH86_07735) - 1738894..1739568 (+) 675 WP_000266245.1 LrgB family protein -
  VFH86_RS07740 (VFH86_07740) cdd 1739738..1740625 (+) 888 WP_001245900.1 cytidine deaminase -
  VFH86_RS07745 (VFH86_07745) - 1740784..1741659 (+) 876 WP_345656850.1 AEC family transporter -
  VFH86_RS07750 (VFH86_07750) purT 1741813..1742988 (+) 1176 WP_000468082.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54514.97 Da        Isoelectric Point: 6.2572

>NTDB_id=920937 VFH86_RS07725 WP_231795691.1 1737073..1738497(+) (sbcB) [Vibrio cholerae strain LK-18]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPKPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIAREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTTPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=920937 VFH86_RS07725 WP_231795691.1 1737073..1738497(+) (sbcB) [Vibrio cholerae strain LK-18]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTAA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCCATTCTCGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGCCCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTACACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.734

100

0.987