Detailed information NTG0920919

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VFH86_RS01105
• Genome accession: NZ_CP142014
• Coordinates: 238686..239693 (+)
• Length: 335 a.a.
• NCBI ID: WP_114708478.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain LK-18
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 233686..244693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VFH86_RS01085 (VFH86_01085)	metJ	233691..234008 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
VFH86_RS01090 (VFH86_01090)	-	234118..235395 (-)	1278	WP_001278591.1	malic enzyme-like NAD(P)-binding protein	-
VFH86_RS01095 (VFH86_01095)	rpmE	235703..235921 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
VFH86_RS01100 (VFH86_01100)	priA	236176..238380 (+)	2205	WP_345658061.1	primosomal protein N'	-
VFH86_RS01105 (VFH86_01105)	cytR	238686..239693 (+)	1008	WP_114708478.1	DNA-binding transcriptional regulator CytR	Regulator
VFH86_RS01110 (VFH86_01110)	-	239865..240416 (+)	552	WP_001891621.1	SPOR domain-containing protein	-
VFH86_RS01115 (VFH86_01115)	hslV	240553..241110 (+)	558	WP_000208247.1	ATP-dependent protease subunit HslV	-
VFH86_RS01120 (VFH86_01120)	hslU	241176..242507 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
VFH86_RS01125 (VFH86_01125)	-	242611..243528 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VFH86_RS01130 (VFH86_01130)	rraA	243603..244118 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37034.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=920919 VFH86_RS01105 WP_114708478.1 238686..239693(+) (cytR) [Vibrio cholerae strain LK-18]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMSIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=920919 VFH86_RS01105 WP_114708478.1 238686..239693(+) (cytR) [Vibrio cholerae strain LK-18]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACTTGCCACCAATGGTGATGGCATGTGAATTTGCCCCCGAACTTGAATTGCCTACCGTTCACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACTATGTCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCCGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	99.701	100	0.997
cytR	Vibrio parahaemolyticus RIMD 2210633	90.419	99.701	0.901