Detailed information NTG0092089

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCV56_RS06740
• Genome accession: NZ_AP025492
• Coordinates: 1485542..1486966 (-)
• Length: 474 a.a.
• NCBI ID: WP_086713214.1
• Uniprot ID: -
• Organism: Vibrio gigantis strain LMG 22741
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1480542..1491966

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV56_RS06715	-	1481124..1481777 (+)	654	WP_086713209.1	thiopurine S-methyltransferase	-
OCV56_RS06720	purT	1481892..1483067 (-)	1176	WP_086713210.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCV56_RS06725	cdd	1483235..1484122 (-)	888	WP_086713211.1	cytidine deaminase	-
OCV56_RS06730	-	1484465..1485142 (-)	678	WP_086713212.1	LrgB family protein	-
OCV56_RS06735	-	1485145..1485516 (-)	372	WP_086713213.1	CidA/LrgA family protein	-
OCV56_RS06740	sbcB	1485542..1486966 (-)	1425	WP_086713214.1	exodeoxyribonuclease I	Machinery gene
OCV56_RS06745	-	1487909..1488343 (+)	435	WP_086713215.1	DUF4402 domain-containing protein	-
OCV56_RS06750	-	1488402..1488839 (+)	438	WP_190960456.1	DUF4402 domain-containing protein	-
OCV56_RS06755	-	1488836..1489546 (+)	711	WP_086713216.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54608.82 Da
• Isoelectric Point: 4.8620

>NTDB_id=92089 OCV56_RS06740 WP_086713214.1 1485542..1486966(-) (sbcB) [Vibrio gigantis strain LMG 22741]
MSSDNQSTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELNTDELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFGDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=92089 OCV56_RS06740 WP_086713214.1 1485542..1486966(-) (sbcB) [Vibrio gigantis strain LMG 22741]
ATGAGTTCAGATAATCAGTCGACCTACTTCTTTTTCGATTACGAAACTTGGGGCGTTAGTCCAGCGAAAGATCGTCCAAG
TCAATTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAACCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTTCCTGCTCCTGAAGCAGCATTGATCACCCGTATCACACCTCAAAAAGCGGCTTCACAAGGCCTTCCTGAACCA
GAGTTTATCGCTAAGATCCACGCTGAGTTAGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
CGAAGTAACGCGATACACCTGTTACCGTAACTTCATCGATCCATACGCATGGAGCTGGCAGAACGGTAATTCGCGTTGGG
ATCTGTTAGATGTCATGCGCGCCGTACACGCACTTCGCCCAGACGGTATTGTGTGGCCAGAAAATGAAGAAGGTTATCCA
AGCTTCAAACTGGAACATCTCTCTGTGGCAAACGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCTGCACAGCCTAAGATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTAGTTGATATCGTAAACATGACACCTTTGATGCACGTTTCGGGTATGTTTGGTCGAGATTGCAATTAC
ACAAGCTGGATTGTTCCTATGGCGTGGCACCCGACCAATCAAAACGCCGTTATCGTAGTGGACTTAGCGAAAGACCCTAG
CCCGCTGCTTGAGCTAAATACCGACGAGCTAAGAGACAGACTCTACACCAAACGCAGTGAACTAGGTGAAGATGAGCTAC
CGGTACCAATCAAACTGGTACAACTCAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAACGCCGAA
ACCATCGGTATCGATCGCCAGCAATGCTTGAAGAACTTAGCTCTATTACGTGAACATCCAGAGATCCGTGAGAAGCTGAT
CGGTTTGTATTCACAAGAGCGTGAGTACGAGAAAAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTTTCACCTG
CTGATAAAACAGCGATGAACATCATTCGCGAAACTGACCCGAACAACTTGGCAGCTTTGGATATCACCTTTGGTGACGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCACGTAACTTCCCATGGACTCTCGACGAAGCTGAACAATTGAAATGGGC
GAACCATTGTCGTGAATTTTATGAGAGCCGTTTAGAAGAGTACATGCTTAACCTCGAAAACCTCGCGCACGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAGTACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	75.687	99.789	0.755