Detailed information NTG0920883

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: VA608_RS06540
• Genome accession: NZ_CP142011
• Coordinates: 1433247..1433747 (+)
• Length: 166 a.a.
• NCBI ID: WP_005719438.1
• Uniprot ID: A0A9X3URY5
• Organism: Pasteurella multocida strain PM-1
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1433930..1434394	1433247..1433747	flank	183

Gene organization within MGE regions

Location: 1433247..1434394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA608_RS06540 (VA608_06540)	ssb	1433247..1433747 (+)	501	WP_005719438.1	single-stranded DNA-binding protein	Machinery gene
VA608_RS06545 (VA608_06545)	tnpA	1433930..1434394 (+)	465	WP_014325726.1	IS200/IS605 family transposase	-

Sequence

Protein

• Length: 166 a.a.
• Molecular weight: 18673.68 Da
• Isoelectric Point: 5.3353

>NTDB_id=920883 VA608_RS06540 WP_005719438.1 1433247..1433747(+) (ssb) [Pasteurella multocida strain PM-1]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide

• Length: 501 bp

>NTDB_id=920883 VA608_RS06540 WP_005719438.1 1433247..1433747(+) (ssb) [Pasteurella multocida strain PM-1]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGG
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Glaesserella parasuis strain SC1401	69.231	100	0.759
ssb	Vibrio cholerae strain A1552	53.591	100	0.584
ssb	Neisseria meningitidis MC58	44.068	100	0.47
ssb	Neisseria gonorrhoeae MS11	44.068	100	0.47