Detailed information NTG0920880

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB3W22_RS06780
• Genome accession: NZ_CP162335
• Coordinates: 1456359..1457363 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 1001d0_1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1451359..1462363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3W22_RS06750 (AB3W22_06750)	fghA	1451451..1452302 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
AB3W22_RS06755 (AB3W22_06755)	ispF	1452373..1452846 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB3W22_RS06760 (AB3W22_06760)	truD	1452843..1453910 (+)	1068	WP_014602573.1	tRNA pseudouridine(13) synthase TruD	-
AB3W22_RS06765 (AB3W22_06765)	surE	1453898..1454647 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
AB3W22_RS06770 (AB3W22_06770)	-	1454680..1455315 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AB3W22_RS06775 (AB3W22_06775)	-	1455361..1456254 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
AB3W22_RS06780 (AB3W22_06780)	rpoS	1456359..1457363 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
AB3W22_RS06785 (AB3W22_06785)	fdxA	1457790..1458113 (-)	324	WP_003092272.1	ferredoxin FdxA	-
AB3W22_RS06790 (AB3W22_06790)	mutS	1458180..1460747 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
AB3W22_RS06795 (AB3W22_06795)	-	1460873..1461880 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=920880 AB3W22_RS06780 WP_003113871.1 1456359..1457363(+) (rpoS) [Pseudomonas aeruginosa strain 1001d0_1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=920880 AB3W22_RS06780 WP_003113871.1 1456359..1457363(+) (rpoS) [Pseudomonas aeruginosa strain 1001d0_1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653