Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV56_RS06660 Genome accession   NZ_AP025492
Coordinates   1470719..1471900 (-) Length   393 a.a.
NCBI ID   WP_086713199.1    Uniprot ID   A0A5M9P1J8
Organism   Vibrio gigantis strain LMG 22741     
Function   induction of competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1453926..1476212 1470719..1471900 within 0


Gene organization within MGE regions


Location: 1453926..1476212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS06585 - 1453926..1455476 (+) 1551 WP_086713185.1 PAS domain-containing methyl-accepting chemotaxis protein -
  OCV56_RS06590 pnuC 1455758..1456492 (+) 735 WP_086713186.1 nicotinamide riboside transporter PnuC -
  OCV56_RS06595 - 1456501..1457229 (+) 729 WP_086713187.1 nucleoside phosphorylase -
  OCV56_RS06600 - 1457358..1458038 (+) 681 WP_086713188.1 Crp/Fnr family transcriptional regulator -
  OCV56_RS06605 - 1458445..1458588 (-) 144 WP_167373167.1 hypothetical protein -
  OCV56_RS06610 - 1458613..1458888 (-) 276 WP_086713189.1 HU family DNA-binding protein -
  OCV56_RS06615 - 1459227..1459922 (-) 696 WP_086713190.1 VC0807 family protein -
  OCV56_RS06620 - 1460078..1461322 (-) 1245 WP_086713191.1 NADH:flavin oxidoreductase/NADH oxidase family protein -
  OCV56_RS06625 - 1461534..1462106 (-) 573 WP_086713192.1 YceI family protein -
  OCV56_RS06630 - 1462559..1464445 (+) 1887 WP_086713193.1 methyl-accepting chemotaxis protein -
  OCV56_RS06635 - 1464548..1464949 (-) 402 WP_086713194.1 ACT domain-containing protein -
  OCV56_RS06640 - 1465116..1466009 (-) 894 WP_086713195.1 LysR family transcriptional regulator -
  OCV56_RS06645 - 1466202..1467104 (+) 903 WP_086713196.1 Vmh family MBL fold metallo-hydrolase -
  OCV56_RS06650 - 1467406..1468221 (+) 816 WP_086713197.1 TauD/TfdA family dioxygenase -
  OCV56_RS06655 - 1468478..1470526 (+) 2049 WP_086713198.1 response regulator -
  OCV56_RS06660 cqsA 1470719..1471900 (-) 1182 WP_086713199.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV56_RS06665 - 1472170..1473552 (-) 1383 WP_086713200.1 PLP-dependent aminotransferase family protein -
  OCV56_RS06670 - 1473657..1474550 (+) 894 WP_086713201.1 EamA family transporter -
  OCV56_RS06675 - 1474593..1475351 (-) 759 WP_086713202.1 helix-turn-helix domain-containing protein -
  OCV56_RS06680 - 1475481..1476212 (+) 732 WP_086713203.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43564.75 Da        Isoelectric Point: 6.1445

>NTDB_id=92088 OCV56_RS06660 WP_086713199.1 1470719..1471900(-) (cqsA) [Vibrio gigantis strain LMG 22741]
MSDKSATKPLPSFIEERLNFYIQDLITQNESKKHLVLGKRPQQKSVVMQSNDYLALSHNTQIQKAHQSAICEHDDNVVMS
AIFLQDEQSKPAFETELASYVGMESCLLSQSGWAANIGLLQTICPPGTPVYIDFLAHMSLWEGIRAAGAVAHPFMHNNMS
HLRKQLERHGSGVIVVDSVYSTIGTIAPLHDICEMAQEFDCALVVDESHSLGTHGENGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKQLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEIIKGAEDKRETLFKRAKSLVAGLKRIGFNIRSESQ
IVALECGNETNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCYEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=92088 OCV56_RS06660 WP_086713199.1 1470719..1471900(-) (cqsA) [Vibrio gigantis strain LMG 22741]
ATGAGTGATAAATCAGCAACAAAACCACTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGATCTAATTAC
CCAAAACGAAAGCAAAAAGCACTTAGTCTTGGGTAAACGACCTCAGCAAAAATCCGTTGTGATGCAGAGCAATGATTACC
TAGCACTGTCACACAATACGCAGATCCAAAAAGCCCATCAATCAGCGATCTGTGAGCACGATGACAACGTGGTGATGTCT
GCCATTTTTTTACAAGATGAGCAGTCTAAGCCCGCGTTTGAAACCGAGCTTGCGAGCTATGTTGGAATGGAAAGCTGTTT
GCTTTCTCAGTCTGGCTGGGCGGCCAATATTGGACTGCTTCAAACCATTTGCCCACCAGGTACACCTGTATACATCGACT
TTCTTGCACATATGTCGCTATGGGAAGGCATTCGCGCTGCAGGCGCTGTTGCCCACCCGTTTATGCACAATAATATGAGC
CACCTACGTAAACAGTTAGAACGTCACGGCTCGGGAGTCATCGTTGTCGACTCGGTTTACAGTACGATTGGCACGATTGC
CCCACTGCACGACATCTGCGAAATGGCGCAAGAGTTTGATTGCGCATTGGTCGTTGATGAATCGCATTCATTGGGGACAC
ACGGGGAAAATGGTGCCGGCTTGGTTCAAGCTCTGGGGCTTACTAACAAAGTGGACTTCATCACCGTCAGCTTGGCAAAG
ACCTTTGCTTATCGGGCAGGCGCAATCCTTGGTCCGAAACAACTTTCAGAAACCTTACCTTTCGTCGCGTACCCTGCGAT
CTTTAGCTCGACAGTGTTACCACAGGAAGTGGTTCGTTTAGAGAAAACTTTAGAGATAATCAAAGGTGCAGAAGACAAAC
GAGAAACCCTGTTCAAGCGGGCAAAATCGCTTGTTGCGGGTCTAAAGCGAATTGGCTTTAATATCCGTAGCGAGTCTCAA
ATTGTGGCGTTGGAGTGCGGCAATGAGACAAATACTGAACGTGTGCGTGACTTCCTAGAAGAACGAGATGTGTTCGGTGC
CGTTTTCTGCCGCCCTGCAACTGGCAAGAACAAAAACATCATTCGCTTTTCAGTGAATGCAGACATGACACCAAGAGATA
TTGACCATGTGCTCACGGTTTGTTATGAAGCGTACAATCACCCGGAATTAGAGTTCGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9P1J8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55

Multiple sequence alignment