Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   M3O54_RS15525 Genome accession   NZ_CP142004
Coordinates   3593234..3594628 (+) Length   464 a.a.
NCBI ID   WP_064634547.1    Uniprot ID   -
Organism   Xanthomonas nasturtii strain 8853     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3588234..3599628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3O54_RS15505 (M3O54_015495) - 3588786..3589070 (-) 285 WP_330469388.1 hypothetical protein -
  M3O54_RS15510 (M3O54_015500) sucD 3589139..3590014 (-) 876 WP_064634550.1 succinate--CoA ligase subunit alpha -
  M3O54_RS15515 (M3O54_015505) sucC 3590039..3591208 (-) 1170 WP_064634549.1 ADP-forming succinate--CoA ligase subunit beta -
  M3O54_RS15520 (M3O54_015510) - 3591441..3593054 (+) 1614 WP_064634548.1 PAS domain-containing sensor histidine kinase -
  M3O54_RS15525 (M3O54_015515) pilR 3593234..3594628 (+) 1395 WP_064634547.1 sigma-54 dependent transcriptional regulator Regulator
  M3O54_RS15530 (M3O54_015520) pilB 3594758..3596464 (-) 1707 WP_193395481.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M3O54_RS15535 (M3O54_015525) galE 3596611..3597603 (-) 993 WP_239687036.1 UDP-glucose 4-epimerase GalE -
  M3O54_RS15540 (M3O54_015530) - 3597691..3599235 (-) 1545 WP_064634545.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50171.53 Da        Isoelectric Point: 6.4497

>NTDB_id=920846 M3O54_RS15525 WP_064634547.1 3593234..3594628(+) (pilR) [Xanthomonas nasturtii strain 8853]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEISKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=920846 M3O54_RS15525 WP_064634547.1 3593234..3594628(+) (pilR) [Xanthomonas nasturtii strain 8853]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGACGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAACCCCTACGACCTGTGCCTGA
CCGACATGCGTTTGCCTGACGGCAACGGCATCGAACTGGTCACCGAAATCTCGAAGCACTACCCGCAAACCCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGGCGTGCTGCGTGGGCTGGTCAAGCATGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACCGCCGC
CGCCGGAGCAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCCATGGAGAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGT
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAACAGGGCGC
ACGCGCGGCAGGACCGTTCGTGCCGGTCAACTGCGGTGCCATCCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCACATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCGGCGAATCGCTGGTCGATGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCACGACTTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCGCGCCTGGCGCATAGCCACGGCCGCCCGATTCCGCTGCTGACCCAATCCGCGCTCGA
CGCGCTGGATCACTACGGCTTCCCCGGCAACGTCCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCTGCCACACCCGGCAGCGCCGCC
GTGGAACCGCGCGAAGCCGTCGTCGATATCGACCCCGCCTCGGCCGCCCTGCCCTCGTATATCGAACAACTGGAGCGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAGAACCGCCGCGCAGCTGGGCATCACGTTTCGTGCGC
TGCGGTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

99.784

0.634
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491