Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VML59_RS09825 Genome accession   NZ_CP142003
Coordinates   1916644..1916931 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus pacificus strain AT31     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1911644..1921931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS09805 - 1912818..1913015 (+) 198 WP_014893815.1 DUF4083 domain-containing protein -
  VML59_RS09810 - 1913047..1913508 (+) 462 WP_074567832.1 NUDIX hydrolase -
  VML59_RS09815 nadE 1913557..1914375 (-) 819 WP_000174882.1 ammonia-dependent NAD(+) synthetase -
  VML59_RS09820 - 1914647..1916527 (+) 1881 WP_074567833.1 FtsX-like permease family protein -
  VML59_RS09825 abrB 1916644..1916931 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  VML59_RS09830 - 1917244..1918194 (+) 951 WP_001089044.1 serine protease -
  VML59_RS09835 - 1918235..1918543 (-) 309 WP_001259918.1 ArsR/SmtB family transcription factor -
  VML59_RS09840 - 1918651..1919586 (+) 936 WP_074567834.1 aldo/keto reductase -
  VML59_RS09845 - 1919756..1920931 (+) 1176 WP_000832304.1 MFS transporter -
  VML59_RS09850 - 1921119..1921343 (-) 225 WP_000162606.1 hypothetical protein -
  VML59_RS09855 - 1921428..1921775 (-) 348 WP_000426318.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=920809 VML59_RS09825 WP_000648331.1 1916644..1916931(+) (abrB) [Bacillus pacificus strain AT31]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=920809 VML59_RS09825 WP_000648331.1 1916644..1916931(+) (abrB) [Bacillus pacificus strain AT31]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516