Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VML59_RS07860 Genome accession   NZ_CP142003
Coordinates   1530527..1531129 (-) Length   200 a.a.
NCBI ID   WP_000155593.1    Uniprot ID   A0A2A7DG84
Organism   Bacillus pacificus strain AT31     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1525527..1536129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS07840 dnaD 1525828..1526535 (+) 708 WP_000728540.1 DNA replication protein DnaD -
  VML59_RS07845 nth 1526551..1527198 (+) 648 WP_000933028.1 endonuclease III -
  VML59_RS07850 - 1527202..1527720 (+) 519 WP_014893171.1 YpoC family protein -
  VML59_RS07855 - 1527744..1530461 (-) 2718 WP_088106570.1 PBP1A family penicillin-binding protein -
  VML59_RS07860 recU 1530527..1531129 (-) 603 WP_000155593.1 Holliday junction resolvase RecU Machinery gene
  VML59_RS07865 - 1531233..1532258 (+) 1026 WP_014893169.1 DUF2515 domain-containing protein -
  VML59_RS07870 - 1532382..1532558 (-) 177 WP_001982922.1 hypothetical protein -
  VML59_RS07875 - 1532644..1532886 (+) 243 WP_001252039.1 hypothetical protein -
  VML59_RS07880 - 1532902..1533246 (+) 345 WP_000872959.1 YppE family protein -
  VML59_RS07885 - 1533273..1533464 (-) 192 WP_000242661.1 YppF family protein -
  VML59_RS07890 - 1533642..1534109 (+) 468 WP_014893168.1 YppG family protein -
  VML59_RS07895 - 1534265..1534684 (+) 420 WP_000546263.1 CotD family spore coat protein -
  VML59_RS07900 - 1534741..1535295 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  VML59_RS07905 gpsB 1535393..1535728 (+) 336 WP_000622429.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23312.63 Da        Isoelectric Point: 9.5601

>NTDB_id=920808 VML59_RS07860 WP_000155593.1 1530527..1531129(-) (recU) [Bacillus pacificus strain AT31]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=920808 VML59_RS07860 WP_000155593.1 1530527..1531129(-) (recU) [Bacillus pacificus strain AT31]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACGAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAGCATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DG84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625