Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   VML59_RS06520 Genome accession   NZ_CP142003
Coordinates   1287261..1287584 (-) Length   107 a.a.
NCBI ID   WP_000578877.1    Uniprot ID   A0A3P1BX61
Organism   Bacillus pacificus strain AT31     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1282261..1292584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS06495 - 1282407..1283693 (+) 1287 WP_000247008.1 D-alanyl-D-alanine carboxypeptidase family protein -
  VML59_RS06500 sipW 1283886..1284455 (+) 570 WP_000767807.1 signal peptidase I SipW -
  VML59_RS06505 - 1284516..1285106 (+) 591 WP_000172845.1 TasA family protein -
  VML59_RS06510 - 1285263..1286156 (+) 894 WP_014893201.1 DUF4047 domain-containing protein -
  VML59_RS06515 calY 1286584..1287177 (+) 594 WP_000053741.1 biofilm matrix protein CalY -
  VML59_RS06520 sinR 1287261..1287584 (-) 324 WP_000578877.1 helix-turn-helix domain-containing protein Regulator
  VML59_RS06525 - 1287664..1287798 (-) 135 WP_000276218.1 anti-repressor SinI family protein -
  VML59_RS06530 inhA1 1288142..1290532 (+) 2391 WP_088106557.1 M6 family metalloprotease immune inhibitor InhA1 -
  VML59_RS06535 - 1290686..1292071 (+) 1386 WP_074567594.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.15 Da        Isoelectric Point: 8.5404

>NTDB_id=920806 VML59_RS06520 WP_000578877.1 1287261..1287584(-) (sinR) [Bacillus pacificus strain AT31]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=920806 VML59_RS06520 WP_000578877.1 1287261..1287584(-) (sinR) [Bacillus pacificus strain AT31]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P1BX61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692