Detailed information NTG0920801

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB3W07_RS05545
• Genome accession: NZ_CP162303
• Coordinates: 1138553..1139545 (+)
• Length: 330 a.a.
• NCBI ID: WP_048943255.1
• Uniprot ID: -
• Organism: Escherichia coli strain XB2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1133553..1144545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3W07_RS05515 (AB3W07_05515)	ispD	1133614..1134324 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB3W07_RS05520 (AB3W07_05520)	ispF	1134324..1134803 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB3W07_RS05525 (AB3W07_05525)	truD	1134800..1135849 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AB3W07_RS05530 (AB3W07_05530)	surE	1135830..1136591 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB3W07_RS05535 (AB3W07_05535)	pcm	1136585..1137211 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AB3W07_RS05540 (AB3W07_05540)	nlpD	1137396..1138490 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AB3W07_RS05545 (AB3W07_05545)	rpoS	1138553..1139545 (+)	993	WP_048943255.1	RNA polymerase sigma factor RpoS	Regulator
AB3W07_RS05550 (AB3W07_05550)	ygbN	1139639..1141003 (-)	1365	WP_000104456.1	GntP family transporter	-
AB3W07_RS05555 (AB3W07_05555)	ygbM	1141092..1141868 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
AB3W07_RS05560 (AB3W07_05560)	ygbL	1141873..1142511 (-)	639	WP_001278994.1	aldolase	-
AB3W07_RS05565 (AB3W07_05565)	otnK	1142508..1143770 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38002.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=920801 AB3W07_RS05545 WP_048943255.1 1138553..1139545(+) (rpoS) [Escherichia coli strain XB2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEATTLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=920801 AB3W07_RS05545 WP_048943255.1 1138553..1139545(+) (rpoS) [Escherichia coli strain XB2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGACAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715