Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VML59_RS00525 | Genome accession | NZ_CP142003 |
| Coordinates | 94996..97431 (+) | Length | 811 a.a. |
| NCBI ID | WP_000971179.1 | Uniprot ID | A0A063CE58 |
| Organism | Bacillus pacificus strain AT31 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 89996..102431
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VML59_RS00510 | ctsR | 92721..93182 (+) | 462 | WP_001244563.1 | transcriptional regulator CtsR | - |
| VML59_RS00515 | - | 93356..93904 (+) | 549 | WP_014893380.1 | UvrB/UvrC motif-containing protein | - |
| VML59_RS00520 | - | 93909..94973 (+) | 1065 | WP_000050822.1 | protein arginine kinase | - |
| VML59_RS00525 | clpC | 94996..97431 (+) | 2436 | WP_000971179.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| VML59_RS00530 | radA | 97528..98904 (+) | 1377 | WP_001085212.1 | DNA repair protein RadA | Machinery gene |
| VML59_RS00535 | disA | 98908..99981 (+) | 1074 | WP_074567820.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| VML59_RS00540 | - | 100142..101251 (+) | 1110 | WP_000919684.1 | PIN/TRAM domain-containing protein | - |
| VML59_RS00545 | ispD | 101268..101948 (+) | 681 | WP_000288294.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90530.34 Da Isoelectric Point: 6.4056
>NTDB_id=920791 VML59_RS00525 WP_000971179.1 94996..97431(+) (clpC) [Bacillus pacificus strain AT31]
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKVQKEVEALIGRGTEASQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQGGSSTNAN
TPTLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDESRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVNRLKEQEIELHLTEGAISAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVIFDVEGE
SFVIHSAEKVK
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKVQKEVEALIGRGTEASQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQGGSSTNAN
TPTLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDESRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVNRLKEQEIELHLTEGAISAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVIFDVEGE
SFVIHSAEKVK
Nucleotide
Download Length: 2436 bp
>NTDB_id=920791 VML59_RS00525 WP_000971179.1 94996..97431(+) (clpC) [Bacillus pacificus strain AT31]
ATGATGTTTGGAAGATTTACAGAAAGAGCACAGAAAGTATTAGCTTTATCTCAAGAGGAAGCGATTCGTATTGGGCATAA
CAATATTGGAACAGAACATATTTTACTTGGGCTTGTACGCGAAGGTGAAGGAATTGCAGCAAAAGCGTTGATTGCTCTTG
GATTAAGCCCGGAGAAAGTTCAAAAAGAGGTAGAAGCGTTAATTGGGCGCGGAACAGAAGCTTCTCAAACTGTACATTAT
ACACCGCGTGCTAAAAAGGTTATTGAGTTGTCTATGGATGAAGCTCGCAAATTAGGCCATTCTTATGTTGGAACAGAACA
TATCTTACTTGGTTTAATCCGCGAAGGTGAAGGGGTAGCAGCACGTGTTTTAAATAATTTAGGTGTTAGCTTAAATAAGG
CAAGACAACAAGTATTGCAACTTCTTGGAAGTAATGAAGCAAGTTCAGGTCATCAAGGTGGTTCTTCAACAAATGCAAAT
ACACCAACACTTGATAGCTTAGCACGTGATTTAACAGTTGTTGCACGTGAAAATCGTTTAGATCCTGTTATTGGACGTGG
TAAAGAAATTCAACGTGTAATTGAAGTTTTAAGTCGTAGAACAAAAAACAACCCTGTATTAATTGGGGAGCCTGGTGTAG
GTAAAACGGCAATTGCAGAAGGATTAGCACAACAAATTGTAAATAATGAAGTTCCTGAAACTTTAAGAGATAAGCGTGTT
ATGACACTAGATATGGGTACGGTGGTAGCCGGAACGAAATACCGTGGTGAATTTGAAGACCGTTTGAAGAAAGTAATGGA
TGAAATCCGCCAAGCAGGAAATATCATTCTATTTATTGATGAACTTCATACATTAATTGGTGCAGGTGGCGCAGAAGGTG
CTATTGACGCATCGAATATTTTAAAACCATCTTTAGCTCGTGGTGAATTACAATGTATTGGGGCGACAACGTTAGATGAA
TACCGCAAATATATTGAAAAAGACGCAGCTTTAGAGAGACGTTTCCAACCAATTCACGTTGATGAGCCAAGTTTAGATGA
ATCAACTCAAATTTTGAAAGGTTTACGCGATCGTTATGAGGCACATCACCGCGTATCTATTACGGATGATGCAATTGATG
CAGCTGTAAAGCTTTCAGATCGTTATATTACAGATCGTTTCTTACCAGATAAAGCAATTGATTTAATTGATGAAGCTGCT
TCAAAGGTTCGCTTACGCTCTTATACAACACCACCAAATCTAAAAGAGCTTGAAGTGAAGCTTGAGGAAATTAGAAAAGA
GAAAGATGCAGCTGTACAAAGTCAAGAATTTGAAAAAGCTGCTTCGCTACGTGATATGGAACAACGCTTACGTGAGAAGT
TAGAAGATACGAAGCGTCAATGGAAAGAGCAACAAGGAAAAGAAAACTCAGAAGTGACAGTAGAAGATATTGCAAATGTC
GTTTCTACGTGGACTCGTATCCCGGTTTCTAAACTTGCACAAACAGAGACTGATAAATTATTAAACTTAGAATCGATTCT
TCACGATCGTGTTATTGGTCAAGATGAAGCGGTAGTAGCTGTAGCGAAAGCTGTTCGTCGTGCTAGAGCAGGCTTGAAAG
ATCCGAAACGTCCGATTGGTTCATTTATTTTCTTAGGACCAACAGGTGTAGGTAAAACGGAGCTAGCAAGAGCGTTGGCA
GAATCTATGTTCGGTGATGAGGATGCAATGATTCGCATCGATATGTCTGAGTACATGGAGAAGCATTCTACTTCTCGTTT
AGTTGGATCTCCTCCAGGATATGTTGGATATGAAGAAGGTGGACAATTAACAGAAAAGGTTCGCCGTAAGCCATATTCAG
TTGTCTTATTAGATGAAGTAGAGAAAGCTCATCCTGATGTGTTTAACATTTTACTACAAGTATTAGAAGATGGTCGCTTA
ACAGATTCTAAAGGGCGTACAGTTGATTTCCGTAATACAATTGTTATTATGACATCTAACGTTGGTGCAGAAGCGTTAAA
ACGTAATAAACATCTTGGATTTAACGTACAAGATGAGAGCCGCGATTATTCAGATATGAAAGGTAAAGTAATGGATGAAC
TGAAAAAGGCATTCCGTCCAGAATTCTTAAACCGTATTGATGAAATTATCGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAGATTGTAACACTTATGGTAAATCAGTTAGTAAATCGCTTAAAAGAGCAAGAAATTGAATTGCATTTAACAGAAGG
AGCGATTTCAGCTATTGCTGATAAAGGGTTTGACCGAGAGTACGGTGCTCGTCCGCTTCGTAGAGCAATTCAGAAACATG
TAGAAGATAGACTATCGGAAGAACTTTTAAAAGGTGCTATTGAGAAAGGACAAAAAGTTATCTTTGATGTTGAAGGAGAA
TCATTTGTCATTCATAGTGCTGAAAAGGTAAAATAA
ATGATGTTTGGAAGATTTACAGAAAGAGCACAGAAAGTATTAGCTTTATCTCAAGAGGAAGCGATTCGTATTGGGCATAA
CAATATTGGAACAGAACATATTTTACTTGGGCTTGTACGCGAAGGTGAAGGAATTGCAGCAAAAGCGTTGATTGCTCTTG
GATTAAGCCCGGAGAAAGTTCAAAAAGAGGTAGAAGCGTTAATTGGGCGCGGAACAGAAGCTTCTCAAACTGTACATTAT
ACACCGCGTGCTAAAAAGGTTATTGAGTTGTCTATGGATGAAGCTCGCAAATTAGGCCATTCTTATGTTGGAACAGAACA
TATCTTACTTGGTTTAATCCGCGAAGGTGAAGGGGTAGCAGCACGTGTTTTAAATAATTTAGGTGTTAGCTTAAATAAGG
CAAGACAACAAGTATTGCAACTTCTTGGAAGTAATGAAGCAAGTTCAGGTCATCAAGGTGGTTCTTCAACAAATGCAAAT
ACACCAACACTTGATAGCTTAGCACGTGATTTAACAGTTGTTGCACGTGAAAATCGTTTAGATCCTGTTATTGGACGTGG
TAAAGAAATTCAACGTGTAATTGAAGTTTTAAGTCGTAGAACAAAAAACAACCCTGTATTAATTGGGGAGCCTGGTGTAG
GTAAAACGGCAATTGCAGAAGGATTAGCACAACAAATTGTAAATAATGAAGTTCCTGAAACTTTAAGAGATAAGCGTGTT
ATGACACTAGATATGGGTACGGTGGTAGCCGGAACGAAATACCGTGGTGAATTTGAAGACCGTTTGAAGAAAGTAATGGA
TGAAATCCGCCAAGCAGGAAATATCATTCTATTTATTGATGAACTTCATACATTAATTGGTGCAGGTGGCGCAGAAGGTG
CTATTGACGCATCGAATATTTTAAAACCATCTTTAGCTCGTGGTGAATTACAATGTATTGGGGCGACAACGTTAGATGAA
TACCGCAAATATATTGAAAAAGACGCAGCTTTAGAGAGACGTTTCCAACCAATTCACGTTGATGAGCCAAGTTTAGATGA
ATCAACTCAAATTTTGAAAGGTTTACGCGATCGTTATGAGGCACATCACCGCGTATCTATTACGGATGATGCAATTGATG
CAGCTGTAAAGCTTTCAGATCGTTATATTACAGATCGTTTCTTACCAGATAAAGCAATTGATTTAATTGATGAAGCTGCT
TCAAAGGTTCGCTTACGCTCTTATACAACACCACCAAATCTAAAAGAGCTTGAAGTGAAGCTTGAGGAAATTAGAAAAGA
GAAAGATGCAGCTGTACAAAGTCAAGAATTTGAAAAAGCTGCTTCGCTACGTGATATGGAACAACGCTTACGTGAGAAGT
TAGAAGATACGAAGCGTCAATGGAAAGAGCAACAAGGAAAAGAAAACTCAGAAGTGACAGTAGAAGATATTGCAAATGTC
GTTTCTACGTGGACTCGTATCCCGGTTTCTAAACTTGCACAAACAGAGACTGATAAATTATTAAACTTAGAATCGATTCT
TCACGATCGTGTTATTGGTCAAGATGAAGCGGTAGTAGCTGTAGCGAAAGCTGTTCGTCGTGCTAGAGCAGGCTTGAAAG
ATCCGAAACGTCCGATTGGTTCATTTATTTTCTTAGGACCAACAGGTGTAGGTAAAACGGAGCTAGCAAGAGCGTTGGCA
GAATCTATGTTCGGTGATGAGGATGCAATGATTCGCATCGATATGTCTGAGTACATGGAGAAGCATTCTACTTCTCGTTT
AGTTGGATCTCCTCCAGGATATGTTGGATATGAAGAAGGTGGACAATTAACAGAAAAGGTTCGCCGTAAGCCATATTCAG
TTGTCTTATTAGATGAAGTAGAGAAAGCTCATCCTGATGTGTTTAACATTTTACTACAAGTATTAGAAGATGGTCGCTTA
ACAGATTCTAAAGGGCGTACAGTTGATTTCCGTAATACAATTGTTATTATGACATCTAACGTTGGTGCAGAAGCGTTAAA
ACGTAATAAACATCTTGGATTTAACGTACAAGATGAGAGCCGCGATTATTCAGATATGAAAGGTAAAGTAATGGATGAAC
TGAAAAAGGCATTCCGTCCAGAATTCTTAAACCGTATTGATGAAATTATCGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAGATTGTAACACTTATGGTAAATCAGTTAGTAAATCGCTTAAAAGAGCAAGAAATTGAATTGCATTTAACAGAAGG
AGCGATTTCAGCTATTGCTGATAAAGGGTTTGACCGAGAGTACGGTGCTCGTCCGCTTCGTAGAGCAATTCAGAAACATG
TAGAAGATAGACTATCGGAAGAACTTTTAAAAGGTGCTATTGAGAAAGGACAAAAAGTTATCTTTGATGTTGAAGGAGAA
TCATTTGTCATTCATAGTGCTGAAAAGGTAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
85.926 |
99.877 |
0.858 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.5 |
98.644 |
0.498 |
| clpC | Streptococcus thermophilus LMD-9 |
45.969 |
100 |
0.471 |
| clpC | Streptococcus mutans UA159 |
44.881 |
100 |
0.465 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.476 |
100 |
0.465 |
| clpC | Streptococcus pneumoniae D39 |
46.675 |
98.274 |
0.459 |
| clpC | Streptococcus pneumoniae Rx1 |
46.675 |
98.274 |
0.459 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.375 |
98.644 |
0.457 |
| clpE | Streptococcus mutans UA159 |
53.538 |
80.148 |
0.429 |
| clpE | Streptococcus pneumoniae R6 |
52.705 |
79.778 |
0.42 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.705 |
79.778 |
0.42 |
| clpE | Streptococcus pneumoniae Rx1 |
52.705 |
79.778 |
0.42 |
| clpE | Streptococcus pneumoniae D39 |
52.705 |
79.778 |
0.42 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
51.893 |
78.175 |
0.406 |