Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VML59_RS00220 Genome accession   NZ_CP142003
Coordinates   40402..40686 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus pacificus strain AT31     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35402..45686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VML59_RS00185 tmk 35556..36182 (+) 627 WP_000677230.1 dTMP kinase -
  VML59_RS00190 holB 36218..37201 (+) 984 WP_000169574.1 DNA polymerase III subunit delta' -
  VML59_RS00195 - 37207..38034 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  VML59_RS00200 yabA 38049..38399 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  VML59_RS00205 - 38520..39260 (+) 741 WP_014893383.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  VML59_RS00210 - 39247..39537 (+) 291 WP_000414339.1 GIY-YIG nuclease family protein -
  VML59_RS00215 rsmI 39506..40381 (+) 876 WP_000267806.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  VML59_RS00220 abrB 40402..40686 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  VML59_RS00225 metG 41204..43186 (+) 1983 WP_088106323.1 methionine--tRNA ligase -
  VML59_RS00230 - 43352..44119 (+) 768 WP_000895848.1 TatD family hydrolase -
  VML59_RS00235 rnmV 44333..44890 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=920790 VML59_RS00220 WP_000843036.1 40402..40686(-) (abrB) [Bacillus pacificus strain AT31]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=920790 VML59_RS00220 WP_000843036.1 40402..40686(-) (abrB) [Bacillus pacificus strain AT31]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCGATTGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851