Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU78_RS20425 Genome accession   NZ_AP025491
Coordinates   1238511..1239608 (-) Length   365 a.a.
NCBI ID   WP_137373730.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1233511..1244608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS20410 - 1233969..1234955 (+) 987 WP_137373733.1 sensor domain-containing diguanylate cyclase -
  OCU78_RS20415 - 1235121..1235786 (+) 666 WP_137373732.1 PilZ domain-containing protein -
  OCU78_RS20420 luxQ 1235950..1238511 (-) 2562 WP_137373731.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCU78_RS20425 luxP 1238511..1239608 (-) 1098 WP_137373730.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCU78_RS20430 - 1239896..1241062 (-) 1167 WP_137373729.1 conjugal transfer protein TraF -
  OCU78_RS20435 - 1241131..1241442 (-) 312 WP_137373728.1 GIY-YIG nuclease family protein -
  OCU78_RS20440 - 1241484..1242158 (-) 675 WP_137373727.1 YceH family protein -
  OCU78_RS20445 - 1242223..1242423 (-) 201 WP_137373726.1 hypothetical protein -
  OCU78_RS20450 - 1242622..1242936 (+) 315 WP_137373725.1 DUF496 family protein -
  OCU78_RS20455 - 1243081..1243707 (+) 627 WP_137373724.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OCU78_RS20460 - 1243873..1244109 (+) 237 WP_137373723.1 hypothetical protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41600.93 Da        Isoelectric Point: 5.9453

>NTDB_id=92077 OCU78_RS20425 WP_137373730.1 1238511..1239608(-) (luxP) [Vibrio gallaecicus strain CECT 7244]
MKRSLMLLGMALCSSPAMSHGTHILNDYWEYQEFLDHFSEQNELTQKLNEVVQNRPKPLTIRQDKPITISIVYPGQQISD
YWVRNIQAFEKRLDRLKIDYQINQVFTRVNGDITQQSISLQEAIKNKTDYLIFTLDTTRHRKFIEHVLNATDTKLILQNI
TTPVRAWKERQPFMYVGFDHATGSLKLADYFKENAKENAQYSVLYRSEGYISDARGDTFIHDINSETDFKLTSSFYTKAT
KESAYKAAKLSIQKNEDLDFIYACATDVALGAAQAIQESGRTDILVNGWGGGSAELEALEKGELDVTVMRMNDDTGIAMA
EGIKWDLEGYTVPTVYSGDFAIVTKNDSPERVSRLKARAFRYSGQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=92077 OCU78_RS20425 WP_137373730.1 1238511..1239608(-) (luxP) [Vibrio gallaecicus strain CECT 7244]
ATGAAACGTTCACTTATGTTACTTGGGATGGCTTTATGCTCTAGTCCCGCCATGTCGCACGGAACACATATACTAAATGA
TTATTGGGAATATCAAGAATTCCTTGATCATTTTTCGGAGCAAAATGAGCTAACTCAGAAGCTGAATGAGGTTGTTCAAA
ATCGTCCCAAGCCATTAACAATAAGACAAGATAAACCTATAACTATTTCTATAGTTTATCCTGGGCAGCAAATTTCAGAT
TATTGGGTGAGGAATATTCAAGCGTTTGAAAAGCGTTTAGACCGGTTGAAAATTGATTATCAAATTAACCAAGTTTTTAC
TCGTGTTAATGGCGATATCACTCAACAAAGCATTTCTTTACAAGAAGCAATTAAGAATAAAACGGATTATTTGATTTTCA
CTCTGGATACAACTAGACACCGAAAATTCATCGAGCATGTATTAAATGCTACCGACACAAAGTTAATCTTACAGAATATA
ACCACTCCGGTAAGAGCATGGAAAGAACGTCAGCCATTTATGTATGTGGGGTTTGATCATGCAACAGGCAGTTTGAAACT
CGCTGACTACTTCAAAGAAAATGCTAAAGAAAACGCTCAGTACTCGGTGTTATACCGTTCTGAAGGTTATATTAGTGATG
CTCGTGGTGATACATTTATCCATGACATAAATTCAGAGACCGACTTTAAACTCACCTCGTCGTTTTATACAAAAGCAACC
AAAGAGAGTGCTTATAAAGCCGCAAAACTCAGTATCCAAAAAAATGAAGACTTAGACTTTATTTATGCGTGTGCAACAGA
TGTTGCCCTTGGTGCCGCTCAGGCAATTCAAGAGTCGGGTCGCACAGATATTTTAGTCAACGGTTGGGGTGGCGGTTCTG
CTGAACTTGAAGCACTCGAAAAAGGTGAGTTAGACGTGACCGTCATGAGAATGAATGACGACACTGGCATTGCCATGGCT
GAAGGCATTAAATGGGATCTAGAGGGGTATACTGTGCCGACTGTATATTCTGGAGATTTTGCCATAGTCACTAAAAATGA
TTCCCCGGAGCGAGTGTCTCGGCTTAAAGCTCGCGCGTTTAGATATTCAGGACAGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.208

100

0.644

Multiple sequence alignment