Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VIW49_RS07980 Genome accession   NZ_CP142002
Coordinates   1683565..1684191 (+) Length   208 a.a.
NCBI ID   WP_326432696.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain H4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1678565..1689191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIW49_RS07960 (VIW49_07960) - 1678966..1680726 (-) 1761 WP_045261706.1 Lon protease family protein -
  VIW49_RS07965 (VIW49_07965) matP 1680912..1681364 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  VIW49_RS07970 (VIW49_07970) ompA 1681428..1682483 (-) 1056 WP_108780329.1 porin OmpA -
  VIW49_RS07975 (VIW49_07975) sulA 1682838..1683347 (-) 510 WP_041910604.1 SOS-induced cell division inhibitor SulA -
  VIW49_RS07980 (VIW49_07980) sxy/tfoX 1683565..1684191 (+) 627 WP_326432696.1 TfoX/Sxy family DNA transformation protein Regulator
  VIW49_RS07985 (VIW49_07985) yccS 1684148..1686310 (-) 2163 WP_326432698.1 YccS family putative transporter -
  VIW49_RS07990 (VIW49_07990) - 1686330..1686776 (-) 447 WP_041910601.1 YccF domain-containing protein -
  VIW49_RS07995 (VIW49_07995) helD 1686900..1688954 (+) 2055 WP_326432701.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.61 Da        Isoelectric Point: 9.2151

>NTDB_id=920769 VIW49_RS07980 WP_326432696.1 1683565..1684191(+) (sxy/tfoX) [Enterobacter bugandensis strain H4]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSEGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSTFALNAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARESWLKMRAKN
KALSIKVLFALEGAIEGLHEAAIPAGIRRELTEWFNALPEPLENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=920769 VIW49_RS07980 WP_326432696.1 1683565..1684191(+) (sxy/tfoX) [Enterobacter bugandensis strain H4]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCACCACTGGGTGAAATTCATCATCGCGCGCT
GTTCGGCGGCTATACCCTGGCAGTGGATGATGCGGTTTTTGCCATGGTGTCAGAAGGTGAGCTCTACCTCCGTGCCTGTG
AAGAAAGTGCGAAATACTGTGTGAAAAATGCCGCGTCTTTTTTGACCCTGATGAAGCGGGGCCGTCCGGTGCTTCTCAAC
TATTACCGGGTGGATGACGGGCTATGGCAGGACAGGGAGCGTCTGCTTCAGCTCTCCACTTTCGCACTTAATGCGGCAAG
AAAAGAGCGTTACCAGCGGCATCAGCGCAATCGACTTAAGGACCTGCCAAACCTGACCTTTCAACTGGAAGTGCTGCTCT
TTGAAGCGGGCATCACCAACGAAGAAACACTGCGGGCGCTTGGCGCAAGGGAGAGCTGGCTGAAGATGCGGGCGAAAAAT
AAAGCGCTGAGTATCAAAGTGCTATTCGCGCTGGAAGGGGCGATCGAGGGGCTGCATGAGGCGGCAATCCCGGCCGGCAT
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACTGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.576

95.192

0.548