Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB3L00_RS09660 Genome accession   NZ_CP162300
Coordinates   2061328..2061963 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain SIMBA113     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2056328..2066963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3L00_RS09635 (AB3L00_09635) - 2056384..2057364 (-) 981 WP_001075412.1 DNA polymerase III subunit delta' -
  AB3L00_RS09640 (AB3L00_09640) kdsB 2057376..2058137 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB3L00_RS09645 (AB3L00_09645) lpxK 2058147..2059157 (-) 1011 WP_000050458.1 tetraacyldisaccharide 4'-kinase -
  AB3L00_RS09650 (AB3L00_09650) msbA 2059160..2060887 (-) 1728 WP_368217103.1 lipid A export permease/ATP-binding protein MsbA -
  AB3L00_RS09655 (AB3L00_09655) - 2060884..2061312 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  AB3L00_RS09660 (AB3L00_09660) exbB 2061328..2061963 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB3L00_RS09665 (AB3L00_09665) - 2062013..2062900 (-) 888 WP_000023426.1 ParB/RepB/Spo0J family partition protein -
  AB3L00_RS09670 (AB3L00_09670) - 2062897..2063679 (-) 783 WP_000057212.1 ParA family protein -
  AB3L00_RS09675 (AB3L00_09675) rsmG 2063701..2064333 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  AB3L00_RS09680 (AB3L00_09680) murU 2064421..2065110 (-) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  AB3L00_RS09685 (AB3L00_09685) - 2065110..2066123 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=920748 AB3L00_RS09660 WP_000264037.1 2061328..2061963(-) (exbB) [Acinetobacter baumannii strain SIMBA113]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=920748 AB3L00_RS09660 WP_000264037.1 2061328..2061963(-) (exbB) [Acinetobacter baumannii strain SIMBA113]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393