Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   VDS58_RS17100 Genome accession   NZ_CP141997
Coordinates   3153577..3154221 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3148577..3159221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS17065 (VDS58_17065) mrpB 3149769..3150200 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  VDS58_RS17070 (VDS58_17070) mrpC 3150200..3150541 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  VDS58_RS17075 (VDS58_17075) mrpD 3150534..3152015 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  VDS58_RS17080 (VDS58_17080) mrpE 3152021..3152497 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  VDS58_RS17085 (VDS58_17085) mrpF 3152497..3152781 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  VDS58_RS17090 (VDS58_17090) mnhG 3152765..3153139 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  VDS58_RS17095 (VDS58_17095) yuxO 3153178..3153558 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  VDS58_RS17100 (VDS58_17100) comA 3153577..3154221 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  VDS58_RS17105 (VDS58_17105) comP 3154302..3156614 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  VDS58_RS17110 (VDS58_17110) comX 3156630..3156851 (-) 222 WP_014480704.1 competence pheromone ComX -
  VDS58_RS17115 (VDS58_17115) - 3156853..3157716 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  VDS58_RS17120 (VDS58_17120) degQ 3157901..3158041 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  VDS58_RS17125 (VDS58_17125) - 3158263..3158388 (+) 126 WP_003228793.1 hypothetical protein -
  VDS58_RS17130 (VDS58_17130) - 3158503..3158871 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=920747 VDS58_RS17100 WP_003220716.1 3153577..3154221(-) (comA) [Bacillus subtilis strain PM0031]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=920747 VDS58_RS17100 WP_003220716.1 3153577..3154221(-) (comA) [Bacillus subtilis strain PM0031]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1