Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   VDS58_RS15150 Genome accession   NZ_CP141997
Coordinates   2768249..2768995 (-) Length   248 a.a.
NCBI ID   WP_159376980.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2763249..2773995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS15125 (VDS58_15125) mreC 2763655..2764527 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  VDS58_RS15130 (VDS58_15130) mreB 2764558..2765571 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  VDS58_RS15135 (VDS58_15135) radC 2765663..2766358 (-) 696 WP_021480240.1 RadC family protein -
  VDS58_RS15140 (VDS58_15140) maf 2766395..2766964 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  VDS58_RS15145 (VDS58_15145) spoIIB 2767117..2768115 (-) 999 WP_021480241.1 stage II sporulation protein SpoIIB -
  VDS58_RS15150 (VDS58_15150) comC 2768249..2768995 (-) 747 WP_159376980.1 prepilin peptidase Machinery gene
  VDS58_RS15155 (VDS58_15155) folC 2769137..2770429 (-) 1293 WP_043856952.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  VDS58_RS15160 (VDS58_15160) valS 2770489..2773131 (-) 2643 WP_159377213.1 valine--tRNA ligase -
  VDS58_RS15165 (VDS58_15165) - 2773579..2773770 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26499.08 Da        Isoelectric Point: 9.7433

>NTDB_id=920742 VDS58_RS15150 WP_159376980.1 2768249..2768995(-) (comC) [Bacillus subtilis strain PM0031]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLIYPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=920742 VDS58_RS15150 WP_159376980.1 2768249..2768995(-) (comC) [Bacillus subtilis strain PM0031]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTATCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992