Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VDS58_RS12555 Genome accession   NZ_CP141997
Coordinates   2313602..2314222 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2308602..2319222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS12515 (VDS58_12515) ptsA 2309733..2310239 (-) 507 WP_029726788.1 PTS sugar transporter subunit IIA -
  VDS58_RS12520 (VDS58_12520) ypqA 2310377..2310796 (+) 420 WP_038828605.1 Hsp20/alpha crystallin family protein -
  VDS58_RS12525 (VDS58_12525) sppG 2310817..2311194 (-) 378 WP_015251832.1 YppG family protein -
  VDS58_RS12530 (VDS58_12530) yppF 2311382..2311570 (+) 189 WP_003230690.1 YppF family protein -
  VDS58_RS12535 (VDS58_12535) yppE 2311609..2311980 (-) 372 WP_021481525.1 YppE family protein -
  VDS58_RS12540 (VDS58_12540) yppD 2312026..2312271 (-) 246 WP_021481526.1 DUF5446 family protein -
  VDS58_RS12545 (VDS58_12545) sspM 2312470..2312574 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  VDS58_RS12550 (VDS58_12550) yppC 2312599..2313561 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  VDS58_RS12555 (VDS58_12555) recU 2313602..2314222 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  VDS58_RS12560 (VDS58_12560) ponA 2314244..2316997 (+) 2754 WP_120028310.1 transglycosylase domain-containing protein -
  VDS58_RS12565 (VDS58_12565) ypoC 2317073..2317567 (-) 495 WP_120028311.1 YpoC family protein -
  VDS58_RS12570 (VDS58_12570) nth 2317564..2318223 (-) 660 WP_009967580.1 endonuclease III -
  VDS58_RS12575 (VDS58_12575) dnaD 2318242..2318940 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=920722 VDS58_RS12555 WP_004399067.1 2313602..2314222(+) (recU) [Bacillus subtilis strain PM0031]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=920722 VDS58_RS12555 WP_004399067.1 2313602..2314222(+) (recU) [Bacillus subtilis strain PM0031]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1