Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   VDS58_RS12105 Genome accession   NZ_CP141997
Coordinates   2240442..2241572 (+) Length   376 a.a.
NCBI ID   WP_101502349.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2235442..2246572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS12075 (VDS58_12075) - 2235906..2237693 (+) 1788 WP_231833915.1 teichoic acid biosynthesis protein -
  VDS58_RS12080 (VDS58_12080) - 2237707..2238096 (+) 390 WP_231833916.1 hypothetical protein -
  VDS58_RS12085 (VDS58_12085) - 2238097..2238246 (+) 150 WP_120028283.1 XkdX family protein -
  VDS58_RS12090 (VDS58_12090) - 2238476..2239528 (+) 1053 WP_231833917.1 N-acetylmuramoyl-L-alanine amidase family protein -
  VDS58_RS12095 (VDS58_12095) - 2239644..2240036 (+) 393 WP_192857851.1 hypothetical protein -
  VDS58_RS12100 (VDS58_12100) - 2240058..2240309 (+) 252 WP_017696899.1 phage holin -
  VDS58_RS12105 (VDS58_12105) rapC 2240442..2241572 (+) 1131 WP_101502349.1 tetratricopeptide repeat protein Regulator
  VDS58_RS12110 (VDS58_12110) - 2241562..2241705 (+) 144 WP_162985138.1 hypothetical protein -
  VDS58_RS12115 (VDS58_12115) - 2241764..2242345 (-) 582 WP_192857852.1 SLATT domain-containing protein -
  VDS58_RS12120 (VDS58_12120) - 2242320..2243201 (-) 882 WP_192857853.1 SMODS domain-containing nucleotidyltransferase -
  VDS58_RS12125 (VDS58_12125) uvrX 2243629..2244882 (-) 1254 WP_231833918.1 DNA polymerase thumb domain-containing protein -
  VDS58_RS12130 (VDS58_12130) yolD 2244875..2245207 (-) 333 WP_106019984.1 YolD-like family protein -
  VDS58_RS12135 (VDS58_12135) - 2245381..2245716 (+) 336 WP_019712875.1 hypothetical protein -
  VDS58_RS12140 (VDS58_12140) - 2245759..2246115 (-) 357 WP_019712874.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44351.03 Da        Isoelectric Point: 5.3776

>NTDB_id=920721 VDS58_RS12105 WP_101502349.1 2240442..2241572(+) (rapC) [Bacillus subtilis strain PM0031]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKGQKTYTVRRIQCAFVVAGNFDDLESHEKAIPHLQRALEDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVTLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=920721 VDS58_RS12105 WP_101502349.1 2240442..2241572(+) (rapC) [Bacillus subtilis strain PM0031]
ATGGAGCAATTAATTCCGTCATCCACAGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCAGAAGCAGCCCTTAACATTTATAAAGGCCAAAAAACTTATACTGTTCGCCGAATTCAATGTGCATTTGTTGTAGC
AGGGAACTTTGATGATCTTGAAAGTCATGAGAAAGCTATTCCACACCTTCAGAGAGCCTTGGAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTAGGTAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCACATTGTACGAAAACGATAAAAGTGACCTTCTCCCCCACACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATAAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTGCTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTTATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(193-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.383

100

0.457