Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VDS58_RS08445 Genome accession   NZ_CP141997
Coordinates   1585719..1585997 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain PM0031     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580719..1590997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS08425 (VDS58_08425) panEB 1581907..1582818 (+) 912 WP_103803558.1 ketopantoate reductase family protein -
  VDS58_RS08430 (VDS58_08430) ampS 1582852..1584084 (-) 1233 WP_003232341.1 aminopeptidase -
  VDS58_RS08435 (VDS58_08435) ykpC 1584193..1584327 (-) 135 WP_003238865.1 protein YkpC -
  VDS58_RS08440 (VDS58_08440) mreBH 1584428..1585435 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  VDS58_RS08445 (VDS58_08445) abrB 1585719..1585997 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  VDS58_RS08450 (VDS58_08450) kinC 1586187..1587473 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  VDS58_RS08455 (VDS58_08455) ykqA 1587489..1588316 (+) 828 WP_134991529.1 gamma-glutamylcyclotransferase -
  VDS58_RS08460 (VDS58_08460) ktrC 1588379..1589044 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  VDS58_RS08465 (VDS58_08465) ade 1589200..1590933 (+) 1734 WP_124048365.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=920716 VDS58_RS08445 WP_003244728.1 1585719..1585997(+) (abrB) [Bacillus subtilis strain PM0031]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=920716 VDS58_RS08445 WP_003244728.1 1585719..1585997(+) (abrB) [Bacillus subtilis strain PM0031]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576