Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   VDS58_RS08320 Genome accession   NZ_CP141997
Coordinates   1560057..1560641 (+) Length   194 a.a.
NCBI ID   WP_014113628.1    Uniprot ID   A0A0D1L215
Organism   Bacillus subtilis strain PM0031     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555057..1565641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS08290 (VDS58_08290) dapD 1555244..1555954 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  VDS58_RS08295 (VDS58_08295) dapI 1556024..1557148 (+) 1125 WP_021479383.1 N-acetyldiaminopimelate deacetylase -
  VDS58_RS08300 (VDS58_08300) ykuS 1557210..1557455 (+) 246 WP_003232382.1 YkuS family protein -
  VDS58_RS08305 (VDS58_08305) mscT 1557492..1558295 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  VDS58_RS08310 (VDS58_08310) ahpA 1558532..1559074 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  VDS58_RS08315 (VDS58_08315) ykuV 1559145..1559591 (+) 447 WP_032725606.1 thiol-disulfide oxidoreductase YkuV -
  VDS58_RS08320 (VDS58_08320) rok 1560057..1560641 (+) 585 WP_014113628.1 transcriptional regulator Rok Regulator
  VDS58_RS08325 (VDS58_08325) cse15 1560682..1561647 (-) 966 WP_032725607.1 spore protein Cse15 -
  VDS58_RS08330 (VDS58_08330) mobA 1561784..1562383 (+) 600 WP_021479380.1 molybdenum cofactor guanylyltransferase -
  VDS58_RS08335 (VDS58_08335) moeB 1562434..1563453 (+) 1020 WP_032725608.1 molybdopterin-synthase adenylyltransferase MoeB -
  VDS58_RS08340 (VDS58_08340) glp 1563471..1564763 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  VDS58_RS08345 (VDS58_08345) mobB 1564724..1565245 (+) 522 WP_032725609.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22127.12 Da        Isoelectric Point: 9.7036

>NTDB_id=920715 VDS58_RS08320 WP_014113628.1 1560057..1560641(+) (rok) [Bacillus subtilis strain PM0031]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESAESANE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=920715 VDS58_RS08320 WP_014113628.1 1560057..1560641(+) (rok) [Bacillus subtilis strain PM0031]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTCCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCCGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAACCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTGAATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L215

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

97.423

0.974