Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   VDS58_RS08220 Genome accession   NZ_CP141997
Coordinates   1544183..1544647 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain PM0031     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539183..1549647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS08200 (VDS58_08200) kinA 1539650..1541470 (+) 1821 WP_231834247.1 sporulation histidine kinase KinA -
  VDS58_RS08205 (VDS58_08205) dapX 1541480..1542661 (-) 1182 WP_159376785.1 aminotransferase A -
  VDS58_RS08210 (VDS58_08210) - 1542863..1543024 (-) 162 WP_014476654.1 hypothetical protein -
  VDS58_RS08215 (VDS58_08215) cheV 1543228..1544139 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  VDS58_RS08220 (VDS58_08220) kre 1544183..1544647 (-) 465 WP_003232406.1 YkyB family protein Regulator
  VDS58_RS08225 (VDS58_08225) ykuC 1544773..1546065 (-) 1293 WP_014479656.1 MFS transporter -
  VDS58_RS08230 (VDS58_08230) ltdD 1546141..1546635 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  VDS58_RS08235 (VDS58_08235) ppeE 1546692..1547552 (-) 861 WP_041850886.1 metallophosphoesterase -
  VDS58_RS08240 (VDS58_08240) fadH 1547695..1548459 (+) 765 WP_041850885.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=920714 VDS58_RS08220 WP_003232406.1 1544183..1544647(-) (kre) [Bacillus subtilis strain PM0031]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=920714 VDS58_RS08220 WP_003232406.1 1544183..1544647(-) (kre) [Bacillus subtilis strain PM0031]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTTTTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1