Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   VDS58_RS05055 Genome accession   NZ_CP141997
Coordinates   969650..970444 (+) Length   264 a.a.
NCBI ID   WP_021481166.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 964650..975444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS05025 (VDS58_05025) sxzA 965489..966520 (+) 1032 WP_159376722.1 FecCD family ABC transporter permease -
  VDS58_RS05030 (VDS58_05030) yfhB 966635..967516 (+) 882 WP_159376723.1 PhzF family phenazine biosynthesis isomerase -
  VDS58_RS05035 (VDS58_05035) yfhC 967604..968188 (+) 585 WP_003243940.1 nitroreductase family protein -
  VDS58_RS05040 (VDS58_05040) yfhD 968227..968418 (-) 192 WP_003233561.1 YfhD family protein -
  VDS58_RS05045 (VDS58_05045) yfhE 968485..968595 (-) 111 WP_003223230.1 YfhE family protein -
  VDS58_RS05050 (VDS58_05050) yfhF 968650..969561 (-) 912 WP_103803364.1 TIGR01777 family oxidoreductase -
  VDS58_RS05055 (VDS58_05055) recX 969650..970444 (+) 795 WP_021481166.1 recombination regulator RecX Regulator
  VDS58_RS05060 (VDS58_05060) yfhH 970446..970760 (+) 315 WP_049140592.1 YfhH family protein -
  VDS58_RS05065 (VDS58_05065) yfhI 970903..972096 (+) 1194 WP_003243500.1 MFS transporter -
  VDS58_RS05070 (VDS58_05070) sspK 972128..972280 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  VDS58_RS05075 (VDS58_05075) yfhJ 972405..972674 (+) 270 WP_003243789.1 YfhJ family protein -
  VDS58_RS05080 (VDS58_05080) yfhK 972819..973337 (+) 519 WP_015252515.1 SH3 domain-containing protein -
  VDS58_RS05085 (VDS58_05085) spdL 973422..973754 (+) 333 WP_049140590.1 SdpC immunity protein SpdL -
  VDS58_RS05090 (VDS58_05090) ephM 973741..974601 (+) 861 WP_087614456.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31025.29 Da        Isoelectric Point: 6.6686

>NTDB_id=920698 VDS58_RS05055 WP_021481166.1 969650..970444(+) (recX) [Bacillus subtilis strain PM0031]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQIRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=920698 VDS58_RS05055 WP_021481166.1 969650..970444(+) (recX) [Bacillus subtilis strain PM0031]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGTGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGATAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996