Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | VDS58_RS00245 | Genome accession | NZ_CP141997 |
| Coordinates | 44378..44668 (-) | Length | 96 a.a. |
| NCBI ID | WP_003226760.1 | Uniprot ID | A0A7G9PCZ4 |
| Organism | Bacillus subtilis strain PM0031 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 39378..49668
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VDS58_RS00205 (VDS58_00205) | darA | 39401..39730 (+) | 330 | WP_088272133.1 | cyclic di-AMP receptor DarA | - |
| VDS58_RS00210 (VDS58_00210) | yaaR | 39743..40183 (+) | 441 | WP_009966249.1 | YaaR family protein | - |
| VDS58_RS00215 (VDS58_00215) | holB | 40195..41184 (+) | 990 | WP_088272134.1 | DNA polymerase III subunit delta' | - |
| VDS58_RS00220 (VDS58_00220) | ricT | 41187..42014 (+) | 828 | WP_041338386.1 | competence/sporulation regulator complex protein RicT | - |
| VDS58_RS00225 (VDS58_00225) | yabA | 42029..42388 (+) | 360 | WP_003218308.1 | replication initiation-control protein YabA | - |
| VDS58_RS00230 (VDS58_00230) | trmNF | 42447..43190 (+) | 744 | WP_041338388.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| VDS58_RS00235 (VDS58_00235) | yazA | 43177..43476 (+) | 300 | WP_003242983.1 | GIY-YIG nuclease family protein | - |
| VDS58_RS00240 (VDS58_00240) | rsmI | 43451..44329 (+) | 879 | WP_003243457.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| VDS58_RS00245 (VDS58_00245) | abrB | 44378..44668 (-) | 291 | WP_003226760.1 | transition state genes transcriptional regulator AbrB | Regulator |
| VDS58_RS00250 (VDS58_00250) | metG | 45163..47157 (+) | 1995 | WP_014478594.1 | methionine--tRNA ligase | - |
| VDS58_RS00255 (VDS58_00255) | dayD | 47237..48004 (+) | 768 | WP_014478595.1 | TatD family hydrolase | - |
| VDS58_RS00260 (VDS58_00260) | yabE | 48160..49473 (+) | 1314 | WP_003226754.1 | ubiquitin-like domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10772.62 Da Isoelectric Point: 6.3482
>NTDB_id=920688 VDS58_RS00245 WP_003226760.1 44378..44668(-) (abrB) [Bacillus subtilis strain PM0031]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK
Nucleotide
Download Length: 291 bp
>NTDB_id=920688 VDS58_RS00245 WP_003226760.1 44378..44668(-) (abrB) [Bacillus subtilis strain PM0031]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |