Detailed information NTG0920644

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB3N48_RS05060
• Genome accession: NZ_CP162198
• Coordinates: 1045004..1045996 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STK39-3-E
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1040004..1050996

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3N48_RS05030 (AB3N48_05035)	ispD	1040065..1040775 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB3N48_RS05035 (AB3N48_05040)	ispF	1040775..1041254 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB3N48_RS05040 (AB3N48_05045)	truD	1041251..1042300 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
AB3N48_RS05045 (AB3N48_05050)	surE	1042281..1043042 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB3N48_RS05050 (AB3N48_05055)	pcm	1043036..1043662 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AB3N48_RS05055 (AB3N48_05060)	nlpD	1043847..1044941 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AB3N48_RS05060 (AB3N48_05065)	rpoS	1045004..1045996 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AB3N48_RS05065 (AB3N48_05070)	ygbN	1046090..1047454 (-)	1365	WP_000104441.1	GntP family transporter	-
AB3N48_RS05070 (AB3N48_05075)	ygbM	1047543..1048319 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
AB3N48_RS05075 (AB3N48_05080)	ygbL	1048324..1048962 (-)	639	WP_001278994.1	aldolase	-
AB3N48_RS05080 (AB3N48_05085)	otnK	1048959..1050221 (-)	1263	WP_063080965.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=920644 AB3N48_RS05060 WP_000081550.1 1045004..1045996(+) (rpoS) [Escherichia coli strain STK39-3-E]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=920644 AB3N48_RS05060 WP_000081550.1 1045004..1045996(+) (rpoS) [Escherichia coli strain STK39-3-E]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715