Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   VN992_RS07200 Genome accession   NZ_CP141949
Coordinates   1563977..1564270 (-) Length   97 a.a.
NCBI ID   WP_005598477.1    Uniprot ID   A3N205
Organism   Actinobacillus pleuropneumoniae strain AH2022     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1558977..1569270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN992_RS07170 (VN992_07160) artM 1559309..1559992 (-) 684 WP_005605188.1 arginine ABC transporter permease ArtM -
  VN992_RS07175 (VN992_07165) artQ 1559992..1560663 (-) 672 WP_005608588.1 arginine ABC transporter permease ArtQ -
  VN992_RS07180 (VN992_07170) - 1560669..1561388 (-) 720 WP_005619670.1 transporter substrate-binding domain-containing protein -
  VN992_RS07185 (VN992_07175) artP 1561408..1562142 (-) 735 WP_005598473.1 arginine ABC transporter ATP-binding protein ArtP -
  VN992_RS07190 (VN992_07180) - 1562367..1562864 (-) 498 WP_005601953.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  VN992_RS07195 (VN992_07185) - 1562937..1563899 (+) 963 WP_370427043.1 calcium/sodium antiporter -
  VN992_RS07200 (VN992_07190) HI0659 1563977..1564270 (-) 294 WP_005598477.1 helix-turn-helix domain-containing protein Machinery gene
  VN992_RS07205 (VN992_07195) - 1564251..1564622 (-) 372 WP_005619674.1 type II toxin-antitoxin system RelE/ParE family toxin -
  VN992_RS07210 (VN992_07200) - 1564816..1566567 (+) 1752 WP_237610232.1 protein-disulfide reductase DsbD -
  VN992_RS07215 (VN992_07205) - 1566625..1567194 (+) 570 WP_370427044.1 elongation factor P hydroxylase -
  VN992_RS07220 (VN992_07210) rsmI 1567238..1568092 (-) 855 WP_370427045.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10935.81 Da        Isoelectric Point: 10.3120

>NTDB_id=920579 VN992_RS07200 WP_005598477.1 1563977..1564270(-) (HI0659) [Actinobacillus pleuropneumoniae strain AH2022]
MSPIGSSWTSFEQEIFDESEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKNKTVR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=920579 VN992_RS07200 WP_005598477.1 1563977..1564270(-) (HI0659) [Actinobacillus pleuropneumoniae strain AH2022]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTCGGAAATAGCGGAAACTCAGTTTCG
CATACGACTTATTTTAGAAATCATTGAAACCCGTCAGCAGCTCGGTATTTCTCAACGAAAATTGGAGAAATTAAGCGGCG
TAAAACAATCTATGATTGCTCGGGTAGAAAAAGGCTCGGTTAATCCGTCGTTGGCGACGGTATTAAAGTTGCTTGTGCCG
TTGGGGAAAACTTTACAAATCGTACCGTTAGATAAAAACAAAACGGTACGTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N205

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619