Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   VK748_RS28860 Genome accession   NZ_CP141948
Coordinates   6395468..6396013 (-) Length   181 a.a.
NCBI ID   WP_324709937.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain G5.41a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6390468..6401013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK748_RS28850 (VK748_28850) - 6394152..6394694 (-) 543 WP_043266792.1 PilX N-terminal domain-containing pilus assembly protein -
  VK748_RS28855 (VK748_28855) - 6394691..6395467 (-) 777 WP_324709936.1 PilW family protein -
  VK748_RS28860 (VK748_28860) pilV 6395468..6396013 (-) 546 WP_324709937.1 type IV pilus modification protein PilV Machinery gene
  VK748_RS28865 (VK748_28865) - 6396010..6396513 (-) 504 WP_081884545.1 GspH/FimT family pseudopilin -
  VK748_RS28870 (VK748_28870) - 6397283..6398701 (-) 1419 WP_058073123.1 sigma-54-dependent transcriptional regulator -
  VK748_RS28875 (VK748_28875) - 6398691..6400169 (-) 1479 WP_324709938.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18937.60 Da        Isoelectric Point: 5.1557

>NTDB_id=920561 VK748_RS28860 WP_324709937.1 6395468..6396013(-) (pilV) [Pseudomonas citronellolis strain G5.41a]
MTRRGLAGFSLIEVLVALLVICVGVLGMLAMQGRAIAYSQDMAVRGTAAALADELMETLRTDLYSTQDAGTPLTPPASSD
YYKATGSAFPAAPSSCASLASLSASQRLGCWAQRVRQALPDAASLMSSDFHICRSNGASTCSGTGSAIEIQLAWRVKSGE
CLEASPGSDPTICHYVLREEP

Nucleotide


Download         Length: 546 bp        

>NTDB_id=920561 VK748_RS28860 WP_324709937.1 6395468..6396013(-) (pilV) [Pseudomonas citronellolis strain G5.41a]
ATGACGCGCCGTGGCCTGGCCGGCTTCAGCCTGATCGAAGTGCTGGTGGCGCTGCTGGTGATCTGCGTCGGCGTGCTGGG
CATGCTCGCCATGCAGGGCAGGGCGATCGCCTATTCCCAGGACATGGCGGTGCGCGGCACGGCGGCGGCGCTGGCCGACG
AGCTGATGGAGACCCTCCGCACCGACCTCTATTCCACCCAGGACGCCGGCACGCCGCTGACCCCGCCGGCCAGCTCCGAC
TACTACAAGGCCACCGGCAGCGCCTTCCCCGCAGCACCGAGCAGTTGTGCCTCGCTCGCTTCGCTGAGCGCCTCGCAGCG
CCTGGGCTGCTGGGCGCAGCGGGTGCGGCAGGCGCTGCCCGATGCCGCCAGCCTGATGAGCAGCGACTTCCACATCTGCC
GCAGCAACGGCGCCAGCACCTGCAGCGGCACCGGCTCGGCCATCGAGATCCAGCTGGCCTGGCGGGTGAAGTCCGGCGAG
TGCCTGGAGGCCAGCCCCGGCAGCGACCCGACCATCTGCCACTACGTGCTGCGCGAGGAGCCCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.162

98.895

0.486