Detailed information NTG0092051

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCU78_RS06195
• Genome accession: NZ_AP025490
• Coordinates: 1403256..1404680 (-)
• Length: 474 a.a.
• NCBI ID: WP_137372672.1
• Uniprot ID: -
• Organism: Vibrio gallaecicus strain CECT 7244
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1398256..1409680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU78_RS06170	-	1398710..1399360 (+)	651	WP_137372668.1	thiopurine S-methyltransferase	-
OCU78_RS06175	purT	1399484..1400659 (-)	1176	WP_137372669.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCU78_RS06180	cdd	1400832..1401719 (-)	888	WP_137372670.1	cytidine deaminase	-
OCU78_RS06185	-	1402139..1402834 (-)	696	WP_137372805.1	LrgB family protein	-
OCU78_RS06190	-	1402837..1403214 (-)	378	WP_137372671.1	CidA/LrgA family protein	-
OCU78_RS06195	sbcB	1403256..1404680 (-)	1425	WP_137372672.1	exodeoxyribonuclease I	Machinery gene
OCU78_RS06200	-	1405065..1406753 (-)	1689	WP_137372673.1	NAD-dependent malic enzyme	-
OCU78_RS06205	-	1406938..1409310 (+)	2373	WP_137372674.1	helicase-related protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54528.68 Da
• Isoelectric Point: 5.0189

>NTDB_id=92051 OCU78_RS06195 WP_137372672.1 1403256..1404680(-) (sbcB) [Vibrio gallaecicus strain CECT 7244]
MSSDNQPTYFFFDYETWGTSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPSDYLPAPEAALITRITPQKAATQGLPEP
EFIAQIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPGGIVWPENEEGYP
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKLKTAQPKMYDYLYNMRHKRKVNELIDIVNMTPLMHVSGMFGRDCNY
TSWVVPVAWHPVNKNAVIVVDLAKDPSPLLELDSDALRERLYTKRSELSEDELPVPIKLVHLNKCPVIAPAKTLTANNAE
TIGIDRQQCLKNLAIIKDNPEIREKLIGLYTVDRDYEKSDDVDTHLYDGFFSPADKAAMDIIRETDPNNLAALDISFNDA
RIEPLLFRYRARHFPLTLNENEQQRWANHCRDFYETRIEEYMLNLENLAHEHESDEKKMAILKSVYQYVEKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=92051 OCU78_RS06195 WP_137372672.1 1403256..1404680(-) (sbcB) [Vibrio gallaecicus strain CECT 7244]
ATGAGCTCAGATAACCAGCCGACATACTTCTTTTTCGATTATGAAACTTGGGGAACTAGCCCAGCTAAAGATCGCCCAAG
CCAATTTGCTGGTGTACGTACCGACCAAGATTTTAATATCATCGGTGAGCCATTGGTGATTTATTGTCAGCCACCTTCTG
ATTATCTCCCTGCTCCTGAAGCGGCGTTAATCACAAGAATTACTCCGCAAAAAGCTGCTACGCAAGGTCTTCCTGAGCCT
GAGTTCATCGCACAAATACACGCAGAGCTCGCCAAACCTAATACCACTAGCCTTGGCTATAACAGCATTCGGTTTGATGA
TGAAGTGACTCGCTATACTTGTTACCGAAACTTTATCGACCCTTACGCGTGGAGCTGGCAGAACGGTAATTCTCGTTGGG
ATTTGCTTGATGTTATGCGTGCTGTCCATGCGCTTCGACCGGGTGGTATTGTGTGGCCAGAAAATGAAGAAGGTTACCCA
AGCTTTAAACTTGAGCATCTCTCTAAAGCTAATGGTATTGAACATGAAAATGCTCACGATGCCATGGCTGACGTAATCGC
AACCATTGAGCTCGCTAAAAAGTTAAAAACGGCTCAACCTAAGATGTACGATTACTTATACAACATGCGACACAAGCGTA
AAGTAAATGAGCTGATTGATATTGTAAACATGACACCATTAATGCACGTTTCGGGCATGTTTGGCCGTGATTGCAACTAC
ACTAGCTGGGTCGTACCTGTTGCTTGGCATCCGGTGAACAAGAATGCGGTTATTGTGGTTGATCTTGCAAAAGATCCATC
TCCACTGCTTGAACTGGATTCTGATGCTCTACGTGAAAGGCTTTACACGAAACGCAGTGAATTATCAGAAGATGAACTGC
CAGTTCCAATCAAGTTGGTTCACTTAAACAAATGCCCAGTGATTGCCCCTGCTAAAACTTTGACGGCTAATAATGCCGAA
ACAATCGGCATTGACAGACAACAATGCTTAAAAAATCTAGCCATTATTAAAGACAACCCAGAAATAAGAGAGAAGCTGAT
AGGCTTGTATACAGTCGACAGGGACTATGAAAAAAGTGACGATGTCGATACTCACTTATACGACGGTTTCTTTTCTCCTG
CAGACAAGGCAGCCATGGATATCATTCGTGAAACCGATCCAAACAATCTCGCGGCACTTGATATCAGCTTCAATGATGCT
CGCATTGAACCTCTGCTATTTCGTTATCGTGCAAGGCACTTCCCATTAACTCTCAATGAGAATGAGCAACAACGCTGGGC
TAACCACTGTCGTGATTTTTATGAAACACGAATTGAGGAGTACATGCTAAATCTTGAAAATCTAGCTCATGAACATGAGA
GTGATGAGAAGAAAATGGCGATTCTCAAATCTGTTTACCAATATGTTGAAAAGCTTGTTAGCTAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	74.207	99.789	0.741