Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB3N37_RS14460 Genome accession   NZ_CP162185
Coordinates   2968361..2968990 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain STK78-E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2963361..2973990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N37_RS14445 (AB3N37_14435) helD 2963603..2965657 (-) 2055 WP_001295354.1 DNA helicase IV -
  AB3N37_RS14450 (AB3N37_14440) yccF 2965780..2966226 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AB3N37_RS14455 (AB3N37_14445) yccS 2966236..2968398 (+) 2163 WP_000875061.1 YccS family putative transporter -
  AB3N37_RS14460 (AB3N37_14450) sxy/tfoX 2968361..2968990 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AB3N37_RS14465 (AB3N37_14455) sulA 2969209..2969718 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AB3N37_RS14470 (AB3N37_14460) ompA 2970075..2971115 (+) 1041 WP_000750416.1 porin OmpA -
  AB3N37_RS14475 (AB3N37_14465) matP 2971191..2971643 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AB3N37_RS14480 (AB3N37_14470) ycbZ 2971829..2973589 (+) 1761 WP_032292163.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=920508 AB3N37_RS14460 WP_000839153.1 2968361..2968990(-) (sxy/tfoX) [Escherichia coli strain STK78-E]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=920508 AB3N37_RS14460 WP_000839153.1 2968361..2968990(-) (sxy/tfoX) [Escherichia coli strain STK78-E]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1