Detailed information NTG0920480

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB3N37_RS04960
• Genome accession: NZ_CP162185
• Coordinates: 1021142..1022134 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STK78-E
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1016142..1027134

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3N37_RS04930 (AB3N37_04930)	ispD	1016203..1016913 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB3N37_RS04935 (AB3N37_04935)	ispF	1016913..1017392 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB3N37_RS04940 (AB3N37_04940)	truD	1017389..1018438 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AB3N37_RS04945 (AB3N37_04945)	surE	1018419..1019180 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB3N37_RS04950 (AB3N37_04950)	pcm	1019174..1019800 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AB3N37_RS04955 (AB3N37_04955)	nlpD	1019985..1021079 (+)	1095	WP_311764588.1	murein hydrolase activator NlpD	-
AB3N37_RS04960 (AB3N37_04960)	rpoS	1021142..1022134 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AB3N37_RS04965 (AB3N37_04965)	ygbN	1022228..1023592 (-)	1365	WP_000104441.1	GntP family transporter	-
AB3N37_RS04970 (AB3N37_04970)	ygbM	1023681..1024457 (-)	777	WP_032292424.1	HPr family phosphocarrier protein	-
AB3N37_RS04975 (AB3N37_04975)	ygbL	1024462..1025100 (-)	639	WP_001278994.1	aldolase	-
AB3N37_RS04980 (AB3N37_04980)	otnK	1025097..1026359 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=920480 AB3N37_RS04960 WP_000081550.1 1021142..1022134(+) (rpoS) [Escherichia coli strain STK78-E]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=920480 AB3N37_RS04960 WP_000081550.1 1021142..1022134(+) (rpoS) [Escherichia coli strain STK78-E]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715