Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VK940_RS05950 Genome accession   NZ_CP141901
Coordinates   1174683..1175312 (-) Length   209 a.a.
NCBI ID   WP_000839162.1    Uniprot ID   A0A2T3RS91
Organism   Escherichia albertii strain 6S-65-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1169683..1180312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK940_RS05935 (VK940_05935) helD 1169925..1171979 (-) 2055 WP_044711982.1 DNA helicase IV -
  VK940_RS05940 (VK940_05940) - 1172102..1172548 (+) 447 WP_001261228.1 YccF domain-containing protein -
  VK940_RS05945 (VK940_05945) yccS 1172558..1174723 (+) 2166 WP_072243810.1 YccS family putative transporter -
  VK940_RS05950 (VK940_05950) sxy/tfoX 1174683..1175312 (-) 630 WP_000839162.1 TfoX/Sxy family DNA transformation protein Regulator
  VK940_RS05955 (VK940_05955) sulA 1175530..1176039 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  VK940_RS05960 (VK940_05960) ompA 1176395..1177447 (+) 1053 WP_024164823.1 porin OmpA -
  VK940_RS05965 (VK940_05965) matP 1177522..1177974 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  VK940_RS05970 (VK940_05970) - 1178160..1179920 (+) 1761 WP_059239028.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=920452 VK940_RS05950 WP_000839162.1 1174683..1175312(-) (sxy/tfoX) [Escherichia albertii strain 6S-65-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=920452 VK940_RS05950 WP_000839162.1 1174683..1175312(-) (sxy/tfoX) [Escherichia albertii strain 6S-65-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGAGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

90.431

100

0.904