Detailed information NTG0920399

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: VKS18_RS17725
• Genome accession: NZ_CP141895
• Coordinates: 3582185..3583330 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain B004
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3577185..3588330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VKS18_RS17705 (VKS18_07630)	-	3578082..3578510 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
VKS18_RS17710 (VKS18_07635)	-	3578664..3579176 (+)	513	Protein_3427	bacteriocin biosynthesis protein AlbG	-
VKS18_RS17715 (VKS18_07640)	-	3579183..3580559 (-)	1377	WP_032875890.1	YncE family protein	-
VKS18_RS17720 (VKS18_07645)	-	3580599..3581954 (-)	1356	WP_032875887.1	YncE family protein	-
VKS18_RS17725 (VKS18_07650)	rapF	3582185..3583330 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
VKS18_RS17730 (VKS18_07655)	-	3583314..3583433 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
VKS18_RS17735 (VKS18_07660)	speB	3583556..3584428 (-)	873	WP_032875884.1	agmatinase	-
VKS18_RS17740 (VKS18_07665)	speE	3584487..3585317 (-)	831	WP_003151052.1	spermidine synthase	-
VKS18_RS17745 (VKS18_07670)	-	3585517..3587589 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
VKS18_RS17750 (VKS18_07675)	-	3587614..3588047 (-)	434	Protein_3435	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=920399 VKS18_RS17725 WP_074534220.1 3582185..3583330(+) (rapF) [Bacillus velezensis strain B004]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=920399 VKS18_RS17725 WP_074534220.1 3582185..3583330(+) (rapF) [Bacillus velezensis strain B004]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541