Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   VKS18_RS14750 Genome accession   NZ_CP141895
Coordinates   2998789..2998929 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain B004     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2993789..3003929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKS18_RS14725 (VKS18_04650) - 2994135..2994518 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  VKS18_RS14730 (VKS18_04655) comA 2994540..2995184 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  VKS18_RS14735 (VKS18_04660) comP 2995265..2997565 (-) 2301 WP_032876801.1 histidine kinase Regulator
  VKS18_RS14740 (VKS18_04665) comX 2997579..2997752 (-) 174 WP_012118314.1 competence pheromone ComX -
  VKS18_RS14745 (VKS18_04670) - 2997721..2998581 (-) 861 WP_142925231.1 polyprenyl synthetase family protein -
  VKS18_RS14750 (VKS18_04675) degQ 2998789..2998929 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  VKS18_RS14755 (VKS18_04680) - 2999395..2999736 (+) 342 WP_032876795.1 hypothetical protein -
  VKS18_RS14760 (VKS18_04685) - 2999743..3000966 (-) 1224 WP_032876792.1 EAL and HDOD domain-containing protein -
  VKS18_RS14765 (VKS18_04690) - 3001096..3002562 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  VKS18_RS14770 (VKS18_04695) - 3002580..3003131 (-) 552 WP_003152033.1 isochorismatase family cysteine hydrolase -
  VKS18_RS14775 (VKS18_04700) - 3003228..3003626 (-) 399 WP_003152031.1 DUF1694 domain-containing protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=920389 VKS18_RS14750 WP_003152043.1 2998789..2998929(-) (degQ) [Bacillus velezensis strain B004]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=920389 VKS18_RS14750 WP_003152043.1 2998789..2998929(-) (degQ) [Bacillus velezensis strain B004]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891