Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VKS18_RS12160 Genome accession   NZ_CP141895
Coordinates   2519021..2519635 (-) Length   204 a.a.
NCBI ID   WP_032873955.1    Uniprot ID   -
Organism   Bacillus velezensis strain B004     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2514021..2524635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKS18_RS12130 (VKS18_02055) rpsT 2514324..2514590 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  VKS18_RS12135 (VKS18_02060) holA 2514607..2515648 (-) 1042 Protein_2342 DNA polymerase III subunit delta -
  VKS18_RS12140 (VKS18_02065) - 2515688..2515839 (-) 152 Protein_2343 hypothetical protein -
  VKS18_RS12145 (VKS18_02070) - 2515880..2516014 (+) 135 WP_003152870.1 YqzM family protein -
  VKS18_RS12150 (VKS18_02075) comEC 2516033..2518384 (-) 2352 WP_032873958.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VKS18_RS12155 (VKS18_02080) - 2518385..2518954 (-) 570 WP_003152868.1 ComE operon protein 2 -
  VKS18_RS12160 (VKS18_02085) comEA 2519021..2519635 (-) 615 WP_032873955.1 helix-hairpin-helix domain-containing protein Machinery gene
  VKS18_RS12165 (VKS18_02090) comER 2519694..2520515 (+) 822 WP_012118027.1 late competence protein ComER -
  VKS18_RS12170 (VKS18_02095) - 2520584..2521321 (-) 738 WP_032873951.1 class I SAM-dependent methyltransferase -
  VKS18_RS12175 (VKS18_02100) rsfS 2521318..2521674 (-) 357 WP_007408260.1 ribosome silencing factor -
  VKS18_RS12180 (VKS18_02105) yqeK 2521678..2522253 (-) 576 WP_032873949.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  VKS18_RS12185 (VKS18_02110) - 2522243..2522812 (-) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  VKS18_RS12190 (VKS18_02115) yhbY 2522823..2523113 (-) 291 WP_003152858.1 ribosome assembly RNA-binding protein YhbY -
  VKS18_RS12195 (VKS18_02120) aroE 2523107..2523949 (-) 843 WP_032873946.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22265.47 Da        Isoelectric Point: 6.4940

>NTDB_id=920378 VKS18_RS12160 WP_032873955.1 2519021..2519635(-) (comEA) [Bacillus velezensis strain B004]
MTKAMMTERLRRNLKILGACLVAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDLKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREEKGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=920378 VKS18_RS12160 WP_032873955.1 2519021..2519635(-) (comEA) [Bacillus velezensis strain B004]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGTAGCAGGGGCGGTTTT
TATCTGCATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGACAAGATTATGATTGATTTGAAAGGCGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGAGTGACTCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAACGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAAAGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.115

93.627

0.544
  comEA Latilactobacillus sakei subsp. sakei 23K

31.897

100

0.363