Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VKS18_RS07290 Genome accession   NZ_CP141895
Coordinates   1394001..1394285 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain B004     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389001..1399285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKS18_RS07270 (VKS18_16695) - 1390245..1391153 (+) 909 WP_032874760.1 ketopantoate reductase family protein -
  VKS18_RS07275 (VKS18_16700) - 1391183..1392415 (-) 1233 WP_007409644.1 aminopeptidase -
  VKS18_RS07280 (VKS18_16705) - 1392516..1392650 (-) 135 WP_003154559.1 protein YkpC -
  VKS18_RS07285 (VKS18_16710) mreBH 1392722..1393729 (-) 1008 WP_032875216.1 cell shape-determining protein MreBH -
  VKS18_RS07290 (VKS18_16715) abrB 1394001..1394285 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  VKS18_RS07295 (VKS18_16720) - 1394458..1395762 (+) 1305 WP_032874761.1 ATP-binding protein -
  VKS18_RS07300 (VKS18_16725) - 1395764..1396591 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase family protein -
  VKS18_RS07305 (VKS18_16730) ktrC 1396632..1397297 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  VKS18_RS07310 (VKS18_16735) ade 1397446..1399179 (+) 1734 WP_032874763.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=920358 VKS18_RS07290 WP_003154557.1 1394001..1394285(+) (abrB) [Bacillus velezensis strain B004]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=920358 VKS18_RS07290 WP_003154557.1 1394001..1394285(+) (abrB) [Bacillus velezensis strain B004]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543