Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV50_RS21695 Genome accession   NZ_AP025488
Coordinates   1635718..1636812 (-) Length   364 a.a.
NCBI ID   WP_261904658.1    Uniprot ID   -
Organism   Vibrio fortis strain LMG 21557     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1630718..1641812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS21675 - 1631405..1631713 (+) 309 WP_261904655.1 DUF1289 domain-containing protein -
  OCV50_RS21680 - 1631812..1632156 (-) 345 WP_239840333.1 HopJ type III effector protein -
  OCV50_RS21685 - 1632405..1633064 (+) 660 WP_261904656.1 PilZ domain-containing protein -
  OCV50_RS21690 luxQ 1633136..1635718 (-) 2583 WP_261904657.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCV50_RS21695 luxP 1635718..1636812 (-) 1095 WP_261904658.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCV50_RS21700 - 1637062..1637385 (-) 324 WP_239840337.1 GIY-YIG nuclease family protein -
  OCV50_RS21705 - 1637386..1638039 (-) 654 WP_261904659.1 YceH family protein -
  OCV50_RS21710 - 1638102..1638302 (-) 201 WP_261904660.1 hypothetical protein -
  OCV50_RS21715 - 1638498..1638812 (+) 315 WP_032550242.1 DUF496 family protein -
  OCV50_RS21720 - 1638919..1639545 (+) 627 WP_261904661.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OCV50_RS21725 - 1639700..1639936 (+) 237 WP_261904662.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41254.53 Da        Isoelectric Point: 5.6582

>NTDB_id=92035 OCV50_RS21695 WP_261904658.1 1635718..1636812(-) (luxP) [Vibrio fortis strain LMG 21557]
MKRSLMLLGASLLSGPALSHGTHVLNGYWEYQEFLDKFPAQKALTEHMNQAVQKHPVPLQVKQQEPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRVNADLAQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLSSTNTKLILQNI
TTPVRAWEERQPFMYVGFDHATGSLKLADYFKTHSGEESEYSVLYRSEGYISDARGDTFIHEMSEETNFKLKSSFYTKSD
KESGYKAAKISIARNQDLDFIYACATDVALGAAEAIRESGLDIKLNGWGGGSAELEALARGELDVTVMRMNDDTGIAMAE
AIKWDLEGYAVPTVYSGDFEVVTKEDSPERIEALKQRAFRYSGK

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=92035 OCV50_RS21695 WP_261904658.1 1635718..1636812(-) (luxP) [Vibrio fortis strain LMG 21557]
ATGAAACGTTCACTTATGTTGCTTGGGGCTTCGCTATTGTCAGGGCCAGCCCTTTCCCACGGTACGCATGTGCTTAATGG
CTATTGGGAATACCAAGAGTTTTTGGATAAGTTCCCAGCGCAAAAAGCGCTGACTGAACATATGAACCAAGCCGTTCAAA
AACACCCTGTTCCTTTGCAAGTCAAACAACAAGAACCTATCACTATATCGGTCGTATATCCTGGCCAGCAGATCTCAGAT
TACTGGGTGAGGAATATTCAAGCATTTGAAAAGCGTTTGGATAAACTCAGAATTAATTATCAAATAAATCAGGTCTTTAC
TCGTGTCAACGCCGATTTGGCTCAGCAAAGTATTTCTCTTCAAGAAGCGATAGAAAACAAAACGGATTATCTAATTTTCA
CGCTCGACACAACGCGCCATCGCAAATTTATTGAACACGTTCTGAGCTCAACTAATACCAAGCTGATTCTACAAAACATC
ACAACACCAGTTCGAGCTTGGGAAGAGCGACAGCCATTTATGTACGTGGGTTTTGATCATGCAACAGGCAGTTTGAAGCT
TGCTGACTACTTCAAAACGCATTCAGGAGAAGAGAGCGAGTACTCAGTACTTTATCGCTCAGAAGGCTACATCAGTGATG
CCCGTGGCGATACCTTTATCCATGAAATGAGTGAAGAGACCAACTTTAAACTAAAGTCTTCTTTTTATACTAAGTCTGAT
AAAGAGAGTGGCTATAAAGCCGCTAAGATCAGCATTGCTCGCAATCAAGATCTCGATTTCATCTACGCATGCGCCACTGA
TGTCGCGCTAGGCGCTGCTGAGGCCATCCGTGAATCGGGTTTAGATATCAAACTCAATGGTTGGGGTGGTGGTTCCGCTG
AATTAGAAGCGTTGGCTCGTGGTGAGCTAGATGTTACTGTGATGCGAATGAATGATGACACGGGTATAGCGATGGCAGAA
GCCATTAAATGGGACTTAGAAGGCTATGCTGTACCAACAGTTTACTCTGGAGACTTCGAGGTTGTGACCAAAGAAGACAG
CCCAGAACGTATAGAAGCACTAAAACAACGAGCCTTTAGATACTCAGGAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.859

100

0.646

Multiple sequence alignment